From: Ricardo Wurmus <rekado@elephly.net>
To: 26373@debbugs.gnu.org
Cc: Ricardo Wurmus <rekado@elephly.net>
Subject: bug#26373: [PATCH 1/6] import cran: Exclude experiment packages in predicate "bioconductor-package?".
Date: Wed, 5 Apr 2017 18:42:05 +0200 [thread overview]
Message-ID: <20170405164210.29428-1-rekado@elephly.net> (raw)
In-Reply-To: <8737dm3j19.fsf@elephly.net>
* guix/import/cran.scm (bioconductor-package?): Exclude experiment packages,
because they cannot be updated with the default bioconductor updater.
---
guix/import/cran.scm | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/guix/import/cran.scm b/guix/import/cran.scm
index 8e24f6e17..f63d23972 100644
--- a/guix/import/cran.scm
+++ b/guix/import/cran.scm
@@ -429,7 +429,9 @@ dependencies."
;; the Github mirror, so we have to exclude them
;; from the set of bioconductor packages that can be
;; updated automatically.
- (not (string-contains uri "/data/annotation/"))))))
+ (not (string-contains uri "/data/annotation/"))
+ ;; Experiment packages are in a separate repository.
+ (not (string-contains uri "/data/experiment/"))))))
(and (string-prefix? "r-" (package-name package))
(match (and=> (package-source package) origin-uri)
((? string? uri)
--
2.12.2
next prev parent reply other threads:[~2017-04-05 16:43 UTC|newest]
Thread overview: 18+ messages / expand[flat|nested] mbox.gz Atom feed top
2017-04-05 16:40 bug#26373: Various improvements to the CRAN importer Ricardo Wurmus
2017-04-05 16:42 ` Ricardo Wurmus [this message]
2017-04-05 16:42 ` bug#26373: [PATCH 2/6] import cran: Add predicate for Bioconductor experiment packages Ricardo Wurmus
2017-04-10 9:51 ` Ludovic Courtès
2017-04-10 13:50 ` Ricardo Wurmus
2017-04-10 21:34 ` Ludovic Courtès
2017-04-05 16:42 ` bug#26373: [PATCH 3/6] import cran: Refactor "needs-zlib?" Ricardo Wurmus
2017-04-10 9:52 ` Ludovic Courtès
2017-04-05 16:42 ` bug#26373: [PATCH 4/6] import cran: Check if pkg-config is needed Ricardo Wurmus
2017-04-10 9:52 ` Ludovic Courtès
2017-04-05 16:42 ` bug#26373: [PATCH 5/6] import cran: Ensure substring indices are valid Ricardo Wurmus
2017-04-10 9:52 ` Ludovic Courtès
2017-04-05 16:42 ` bug#26373: [PATCH 6/6] import cran: Skip updating when meta data cannot be downloaded Ricardo Wurmus
2017-04-10 9:55 ` Ludovic Courtès
2017-04-10 13:55 ` Ricardo Wurmus
2017-04-10 21:37 ` Ludovic Courtès
2017-05-16 19:48 ` Ricardo Wurmus
2017-04-10 9:50 ` bug#26373: [PATCH 1/6] import cran: Exclude experiment packages in predicate "bioconductor-package?" Ludovic Courtès
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