Re: [outreach] Help trying to create R package

[Laura Lazzati <laura.lazzati.15@gmail.com>]

On Thu, Oct 18, 2018 at 4:50 AM Gábor Boskovits <boskovits@gmail.com> wrote:
>
> Wow, Björn, you were so fast again :)
>
> I just got around this right now.
Again, thank both for being so kind :)
>
> Björn Höfling <bjoern.hoefling@bjoernhoefling.de> ezt írta (időpont:
> 2018. okt. 18., Cs, 8:54):
> >
> > Hi Laura,
> >
> > On Wed, 17 Oct 2018 22:36:02 -0300
> > Laura Lazzati <laura.lazzati.15@gmail.com> wrote:
> >
> >
> > > > https://www.gnu.org/software/guix/manual/en/html_node/Contributing.html#Contributing
> > > I have already read this chapter, but I am messed up. I have already
> > > cloned from git, but I have some questions:
> > > 1) Do I need to install everything from the git repo in my distro?
> >
> > I'm not sure if I understand you right. You ask if you "need to install
> > everything from the git in my distro?". I don't get that. Let me tell
> > what I mean:
> >
> > You cloned that one, right?
> >
> > git clone https://git.savannah.gnu.org/git/guix.git
> >
> > That is the source code of Guix. I.e. when you do a
> >
> > guix package -i hello
> >
> > then you use the binary "guix" command that you installed in the
> > beginning. And the repository you cloned is just the source code, there
> > is nothing in there that you need to install.
> >
> >
> > Maybe you ment the list of software that is written here:
> >
> > https://www.gnu.org/software/guix/manual/en/guix.html#Building-from-Git
> >
> > When building Guix from a checkout, the following packages are required in addition to those mentioned in the installation instructions (see Requirements).
> >
> >     GNU Autoconf;
> >     GNU Automake;
> >     GNU Gettext;
> >     GNU Texinfo;
> >     Graphviz;
> >     GNU Help2man (optional).
> >
> > So, yeah. In order to compile Guix from source, you need all these.
I was indeed trying to do this.

> >
> > But wait, read the next sentence. You have guix already installed. Guix
> > provides a VERY nice command, `guix envirionment <PACKAGE>`. With that,
> > Guix prepares an "environment" that can be directly used to build
> > <PACKAGE>.
> >
> > So, if you enter:
> >
> > guix environment guix
I have just did this :)
> >
> > then Guix will know best what software in which version it needs in
> > order to build guix (in this case, itself, don't get trapped by that
> > self-circularity :-))
> >
> > When you are in, you can just follow the next steps described:
> >
> > ./bootstrap
This worked fine.
> > ./configure --localstatedir=/var

This did not, I am getting this error:

configure: checking for guile 2.2
configure: found guile 2.2
checking for guile-2.2... /usr/bin/guile-2.2
checking for Guile version >= 2.2... 2.2.3
checking for guild-2.2... no
checking for guile-config-2.2... no
checking for guile-tools-2.2... no
configure: error: 'guild' binary not found; please check your
guile-2.x installation.

Then ran
$guix package -i guile
Same error running configure.
$guix package -s guild
$guix package -i guildhall
And my output of guix -I, however, is:
hello    2.10    out    /gnu/store/bihfrh609gkxb9dp7n96wlpigiv3krfy-hello-2.10
recutils    1.7    out
/gnu/store/6h02na6yz9smc7c7g62ss03kp4yhqpc1-recutils-1.7
glibc-locales    2.27    out
/gnu/store/s28fmfrq8r0c688x59cj0fcyh2pv87nj-glibc-locales-2.27
glibc-utf8-locales    2.27    out
/gnu/store/mbns811n696fl7g060cx6jqjh75mlj8i-glibc-utf8-locales-2.27
nss-certs    3.36.1    out
/gnu/store/h8qlwgwhg6jr0kp5ihy90cgb6h0q1fj9-nss-certs-3.36.1
r-ade4    1.7-11    out
/gnu/store/980xl9a58nd6f22wzwsmv9mkhv7pq3hh-r-ade4-1.7-11
guile    2.2.4    out    /gnu/store/p9wm67w3rfw3hlb9iljgvsfn84mz4w9d-guile-2.2.4
guildhall    0-1.2fe2cc539    out
/gnu/store/kd2mvhr18yphrkiqgavw0w0r0n5bfchn-guildhall-0-1.2fe2cc539

Something weird  is that in configure output I see there is a /usr/bin
mentioned, so I went to that dir, ran
$ ll | grep guile
lrwxrwxrwx  1 root root          23 oct 10 22:55 guile ->
/etc/alternatives/guile*
lrwxrwxrwx  1 root root          43 jul 17 10:42 guile-2.2 ->
../lib/x86_64-linux-gnu/guile-2.2/bin/guile*

And can't figure out why I have that links.

> > make
> >
> > When that went all through well, you can install the "hello"
> > application:
> >
> > ./pre-inst-env guix package -i hello
> >
> > The "./pre-inst-env" tells that you want to use the guix command that
> > you just built, not the one that is somewhere else on your path.
> >
> > Now you just go on:
> >
> > > 2) How do I convert my template into a package? I can't figure out
> > > that part.
> >
> > You don't have to CONVERT. That template IS a package:
> >
> > > > (define-public r-aspi
> > > > (package
> > > >   (name "r-aspi")
> >
> > What you do is you just open the file gnu/packages/r.scm and add your
> > "(define... " at the end.
> >
> > Ehh, wait, there is no file r.scm. It is either cran.scm or
> > bioinformatics.scm.
> >
> > Then you are done. Try to build it:
> >
> > ./pre-inst-env guix build r-aspi
> >
> > Björn
> >
> >
> >
>
> Thank you!
> g_bor

Regards :)
Laura