From: Laura Lazzati <laura.lazzati.15@gmail.com>
To: rekado@elephly.net
Cc: Guix-devel <guix-devel@gnu.org>
Subject: Re: [outreach] Help trying to create R package
Date: Fri, 19 Oct 2018 00:47:59 -0300 [thread overview]
Message-ID: <CAPNLzUMoJjwNDG5VtZ_iQbbsNXS70QqbEVKTqRAR4hKGG6gG_Q@mail.gmail.com> (raw)
In-Reply-To: <CAPNLzUNTr+2v0KQ=6+N32oLYiBf6=eL=hGbuvZTJgb4HtRgTnA@mail.gmail.com>
On Thu, Oct 18, 2018 at 10:05 PM Laura Lazzati
<laura.lazzati.15@gmail.com> wrote:
>
> On Thu, Oct 18, 2018 at 3:17 PM Laura Lazzati
> <laura.lazzati.15@gmail.com> wrote:
> >
> > On Thu, Oct 18, 2018 at 3:15 PM Ricardo Wurmus <rekado@elephly.net> wrote:
> > >
> > >
> > > Hi Laura,
> > >
> > > > configure: checking for guile 2.2
> > > > configure: found guile 2.2
> > > > checking for guile-2.2... /usr/bin/guile-2.2
> > > > checking for Guile version >= 2.2... 2.2.3
> > > > checking for guild-2.2... no
> > > > checking for guile-config-2.2... no
> > > > checking for guile-tools-2.2... no
> > > > configure: error: 'guild' binary not found; please check your
> > > > guile-2.x installation.
> > >
> > > I recommend using “guix environment --pure guix” when on a foreign
> > > distribution.
> > Yes, I am trying that right now :) I'll let you know after reading
> > Invoking guix environment and trying that. Hope this works
> > >
> I have tried lots of things today, not successfully.
>
> with guix environment guix, I get the same output that I get without
> using guix environment (I mean, it uses the installed guix that I tend
> to use generally)
> the output of which guix in both cases is:
> /home/laura/.config/guix/current/bin/guix
>
> with guix environment --pure guix --ad-hoc coreutils findutils which (or -C)
> I get, the output:
> Command 'lesspipe' is available in the following places
> * /bin/lesspipe
> * /usr/bin/lesspipe
> The command could not be located because '/bin:/usr/bin' is not
> included in the PATH environment variable.
> lesspipe: command not found
> There, I run which guix and get:
> which: no guix in
> (/gnu/store/khk3lpx1li9y5zxzdppn9wi4n5g1qsgs-profile/bin:/gnu/store/khk3lpx1li9y5zxzdppn9wi4n5g1qsgs-profile/sbin)
>
> The closest I got was by setting:
> PATH=$PATH:/usr/bin/:/bin
> PATH=$PATH:/usr/local/bin
> And since I still got the issue with guile, I went to
> /usr/bin/
> and created a symlink
> sudo ln -s /gnu/store/p9wm67w3rfw3hlb9iljgvsfn84mz4w9d-guile-2.2.4 guile-2.2.4
> (setting guile-2.2 that whas already there to a hidden file)
> Then the ./configure --localstatedir=/var
> Worked fine, as well as the make (echo $? of both 0)
> There, the result of which guix is:
> /usr/local/bin/guix
> ( a symlink to -> /var/guix/profiles/per-user/root/guix-profile/bin/guix)
> I could run the ./pre-inst-env guix package -i hello, took a while but worked.
> Complained about having to do:
> export PATH="/home/laura/.guix-profile/bin${PATH:+:}$PATH"
> Did so.
> And finally I appended my r-aspi definition to cran.scm
> However, everything went wrong when trying to run: (sorry, the output
> is long and I also get the same output with ./pre-inst-env lint
> r-aspi)
> ./pre-inst-env guix build r-aspi
> ;;; note: source file /home/laura/guix/gnu/packages/cran.scm
> ;;; newer than compiled /home/laura/guix/gnu/packages/cran.go
> guix build: warning: failed to load '(gnu packages abiword)':
> exception thrown: #<condition &invalid-base32-character [character:
> #\t string: "a7izhueiqsdjs2eo7dfyb63cqje7mbqz6ennlyoynxxucbhpdnta"]
I have an update here, sorry, I can't help trying to figure out what's
wrong. In the definition of my r-aspi, I found that the base32 was not
well calculated, and I have already corrected that. Now this line does
not appear anymore when throwing the same commands. the other warnings
do. and the In procedure module-lookup: Unbound variable: continue
too. I also tried generating the new cran.go with guild compile
cran.scm but the output was really awful. If you need it, when you
answer back I paste it.
> 262f6c0>
> guix build: warning: failed to load '(gnu packages android)':
> In procedure module-lookup: Unbound variable: googletest
> guix build: warning: failed to load '(gnu packages avr)':
> In procedure module-lookup: Unbound variable: binutils
> guix build: warning: failed to load '(gnu packages axoloti)':
> In procedure module-lookup: Unbound variable: gcc-4.9
> guix build: warning: failed to load '(gnu packages bioconductor)':
> In procedure module-lookup: Unbound variable: perl-module-build
> guix build: warning: failed to load '(gnu packages bootloaders)':
> no binding `bc' in module (gnu packages algebra)
> guix build: warning: failed to load '(gnu packages chemistry)':
> In procedure module-lookup: Unbound variable: python2-numpy
> guix build: warning: failed to load '(gnu packages commencement)':
> In procedure module-lookup: Unbound variable: gnu-make
> guix build: warning: failed to load '(gnu packages debug)':
> In procedure module-lookup: Unbound variable: gnu-make
> guix build: warning: failed to load '(gnu packages display-managers)':
> In procedure module-lookup: Unbound variable: gpgme
> guix build: warning: failed to load '(gnu packages games)':
> In procedure module-lookup: Unbound variable: unzip
> guix build: warning: failed to load '(gnu packages image-viewers)':
> In procedure module-lookup: Unbound variable: curl
> guix build: warning: failed to load '(gnu packages license)':
> In procedure module-lookup: Unbound variable: perl
> guix build: warning: failed to load '(gnu packages make-bootstrap)':
> In procedure module-lookup: Unbound variable: coreutils
> guix build: warning: failed to load '(gnu packages maven)':
> In procedure module-lookup: Unbound variable: java-plexus-container-default
> guix build: warning: failed to load '(gnu packages syndication)':
> In procedure module-lookup: Unbound variable: curl
> guix build: warning: failed to load '(gnu packages unrtf)':
> In procedure module-lookup: Unbound variable: coreutils
> guix build: error: r-aspi: unknown package
>
>
>
>
> > >
> > > Ricardo
> > >
> Regards,
> Laura
Regards,
Laura
next prev parent reply other threads:[~2018-10-19 3:48 UTC|newest]
Thread overview: 46+ messages / expand[flat|nested] mbox.gz Atom feed top
2018-10-13 13:36 [outreach] Help trying to create R package Laura Lazzati
2018-10-13 17:58 ` Gábor Boskovits
2018-10-13 18:25 ` Catonano
2018-10-14 0:40 ` Laura Lazzati
2018-10-15 22:47 ` Laura Lazzati
2018-10-16 5:44 ` Björn Höfling
2018-10-16 6:23 ` Björn Höfling
2018-10-16 8:28 ` Gábor Boskovits
2018-10-16 13:13 ` Laura Lazzati
2018-10-16 22:18 ` Björn Höfling
2018-10-17 1:01 ` Laura Lazzati
2018-10-17 7:17 ` Björn Höfling
2018-10-17 8:21 ` Gábor Boskovits
2018-10-17 14:27 ` Laura Lazzati
2018-10-17 16:38 ` Laura Lazzati
2018-10-17 17:13 ` Clément Lassieur
2018-10-17 17:50 ` Laura Lazzati
2018-10-18 1:36 ` Laura Lazzati
2018-10-18 6:54 ` Björn Höfling
2018-10-18 7:50 ` Gábor Boskovits
2018-10-18 14:49 ` Laura Lazzati
2018-10-18 15:15 ` Gábor Boskovits
2018-10-18 15:25 ` Laura Lazzati
2018-10-18 15:40 ` Gábor Boskovits
2018-10-18 16:18 ` Laura Lazzati
2018-10-18 17:26 ` Laura Lazzati
2018-10-18 17:41 ` Björn Höfling
2018-10-18 18:14 ` Ricardo Wurmus
2018-10-18 18:17 ` Laura Lazzati
2018-10-19 1:05 ` Laura Lazzati
2018-10-19 3:47 ` Laura Lazzati [this message]
2018-10-19 6:21 ` Gábor Boskovits
2018-10-19 7:09 ` Ricardo Wurmus
2018-10-19 7:29 ` Gábor Boskovits
2018-10-19 18:37 ` Laura Lazzati
2018-10-19 18:45 ` Gábor Boskovits
2018-10-19 20:35 ` Laura Lazzati
2018-10-19 21:25 ` Gábor Boskovits
2018-10-19 23:10 ` Laura Lazzati
2018-10-20 6:08 ` Björn Höfling
2018-10-20 6:34 ` Gábor Boskovits
2018-10-20 13:47 ` Laura Lazzati
2018-10-20 14:01 ` Ludovic Courtès
2018-11-02 19:44 ` Laura Lazzati
2018-11-02 20:12 ` Gábor Boskovits
2018-11-02 20:17 ` Laura Lazzati
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