Re: [outreach] Help trying to create R package

["Gábor Boskovits" <boskovits@gmail.com>]

Helllo Laura,

Laura Lazzati <laura.lazzati.15@gmail.com> ezt írta (időpont: 2018.
okt. 19., P, 5:48):
>
> On Thu, Oct 18, 2018 at 10:05 PM Laura Lazzati
> <laura.lazzati.15@gmail.com> wrote:
> >
> > On Thu, Oct 18, 2018 at 3:17 PM Laura Lazzati
> > <laura.lazzati.15@gmail.com> wrote:
> > >
> > > On Thu, Oct 18, 2018 at 3:15 PM Ricardo Wurmus <rekado@elephly.net> wrote:
> > > >
> > > >
> > > > Hi Laura,
> > > >
> > > > > configure: checking for guile 2.2
> > > > > configure: found guile 2.2
> > > > > checking for guile-2.2... /usr/bin/guile-2.2
> > > > > checking for Guile version >= 2.2... 2.2.3
> > > > > checking for guild-2.2... no
> > > > > checking for guile-config-2.2... no
> > > > > checking for guile-tools-2.2... no
> > > > > configure: error: 'guild' binary not found; please check your
> > > > > guile-2.x installation.
> > > >
> > > > I recommend using “guix environment --pure guix” when on a foreign
> > > > distribution.
> > > Yes, I am trying that right now :) I'll let you know after reading
> > > Invoking guix environment and trying that. Hope this works
> > > >
> > I have tried lots of things today, not successfully.
> >
> > with guix environment guix, I get the same output that I get without
> > using guix environment (I mean, it uses the installed guix that I tend
> > to use generally)
> > the output of which guix in both cases is:
> > /home/laura/.config/guix/current/bin/guix
> >
> > with guix environment --pure guix --ad-hoc coreutils findutils which (or -C)
> > I get, the output:
> > Command 'lesspipe' is available in the following places
> >  * /bin/lesspipe
> >  * /usr/bin/lesspipe
> > The command could not be located because '/bin:/usr/bin' is not
> > included in the PATH environment variable.
> > lesspipe: command not found
> > There, I run which guix and get:
> > which: no guix in
> > (/gnu/store/khk3lpx1li9y5zxzdppn9wi4n5g1qsgs-profile/bin:/gnu/store/khk3lpx1li9y5zxzdppn9wi4n5g1qsgs-profile/sbin)
> >
> > The closest I got was by setting:
> > PATH=$PATH:/usr/bin/:/bin
> > PATH=$PATH:/usr/local/bin
> > And since I still got the issue with guile, I went to
> > /usr/bin/
> > and created a symlink
> > sudo ln -s /gnu/store/p9wm67w3rfw3hlb9iljgvsfn84mz4w9d-guile-2.2.4 guile-2.2.4
> > (setting guile-2.2 that whas already there to a hidden file)
> >  Then the ./configure --localstatedir=/var
> > Worked fine, as well as the make (echo $? of both 0)
> > There, the result of which guix is:
> > /usr/local/bin/guix
> > ( a symlink to -> /var/guix/profiles/per-user/root/guix-profile/bin/guix)
> > I could run the ./pre-inst-env guix package -i hello, took a while but worked.
> > Complained about having to do:
> > export PATH="/home/laura/.guix-profile/bin${PATH:+:}$PATH"
> > Did so.

This seems to be ok so far.

> > And finally I appended my r-aspi definition to cran.scm
> > However, everything went wrong when trying to run: (sorry, the output
> > is long and I also get the same output with ./pre-inst-env lint
> > r-aspi)
> > ./pre-inst-env guix build r-aspi
> > ;;; note: source file /home/laura/guix/gnu/packages/cran.scm
> > ;;;       newer than compiled /home/laura/guix/gnu/packages/cran.go
> > guix build: warning: failed to load '(gnu packages abiword)':
> > exception thrown: #<condition &invalid-base32-character [character:
> > #\t string: "a7izhueiqsdjs2eo7dfyb63cqje7mbqz6ennlyoynxxucbhpdnta"]

If I get you right, then the problem is introduced when you add the
package definition to cran.scm, since
./pre-inst-env guix package -i hello worked.

Since essentially everything is broken by the change, it is most
probable that you have some forms that
is not closed properly.
I would at first check for mismatching parenthesis.

If you can see nothing suspicious, then could you send a diff, so that
I can have a look?

> I have an update here, sorry, I can't help trying to figure out what's
> wrong. In the definition of my r-aspi, I found that the base32 was not
> well calculated, and I have already corrected that. Now this line does
> not appear anymore when throwing the same commands. the other warnings
> do. and the In procedure module-lookup: Unbound variable: continue
> too.  I also tried generating the new cran.go with guild compile
> cran.scm but the output was really awful. If you need it, when you
> answer back I paste it.
> > 262f6c0>
> > guix build: warning: failed to load '(gnu packages android)':
> > In procedure module-lookup: Unbound variable: googletest
> > guix build: warning: failed to load '(gnu packages avr)':
> > In procedure module-lookup: Unbound variable: binutils
> > guix build: warning: failed to load '(gnu packages axoloti)':
> > In procedure module-lookup: Unbound variable: gcc-4.9
> > guix build: warning: failed to load '(gnu packages bioconductor)':
> > In procedure module-lookup: Unbound variable: perl-module-build
> > guix build: warning: failed to load '(gnu packages bootloaders)':
> > no binding `bc' in module (gnu packages algebra)
> > guix build: warning: failed to load '(gnu packages chemistry)':
> > In procedure module-lookup: Unbound variable: python2-numpy
> > guix build: warning: failed to load '(gnu packages commencement)':
> > In procedure module-lookup: Unbound variable: gnu-make
> > guix build: warning: failed to load '(gnu packages debug)':
> > In procedure module-lookup: Unbound variable: gnu-make
> > guix build: warning: failed to load '(gnu packages display-managers)':
> > In procedure module-lookup: Unbound variable: gpgme
> > guix build: warning: failed to load '(gnu packages games)':
> > In procedure module-lookup: Unbound variable: unzip
> > guix build: warning: failed to load '(gnu packages image-viewers)':
> > In procedure module-lookup: Unbound variable: curl
> > guix build: warning: failed to load '(gnu packages license)':
> > In procedure module-lookup: Unbound variable: perl
> > guix build: warning: failed to load '(gnu packages make-bootstrap)':
> > In procedure module-lookup: Unbound variable: coreutils
> > guix build: warning: failed to load '(gnu packages maven)':
> > In procedure module-lookup: Unbound variable: java-plexus-container-default
> > guix build: warning: failed to load '(gnu packages syndication)':
> > In procedure module-lookup: Unbound variable: curl
> > guix build: warning: failed to load '(gnu packages unrtf)':
> > In procedure module-lookup: Unbound variable: coreutils
> > guix build: error: r-aspi: unknown package
> >
> >
> >
> >
> > > >
> > > > Ricardo
> > > >
> > Regards,
> > Laura
> Regards,
> Laura

Best regards,
g_bor