From: Ricardo Wurmus <rekado@elephly.net>
To: Marius Bakke <mbakke@fastmail.com>
Cc: guix-devel@gnu.org
Subject: Re: [PATCH 3/4] gnu: Add barrnap.
Date: Sun, 04 Dec 2016 16:51:26 +0100 [thread overview]
Message-ID: <87pol7bsld.fsf@elephly.net> (raw)
In-Reply-To: <87twakbyaj.fsf@kirby.i-did-not-set--mail-host-address--so-tickle-me>
Marius Bakke <mbakke@fastmail.com> writes:
> Ben Woodcroft <donttrustben@gmail.com> writes:
>
>> * gnu/packages/bioinformatics.scm (barrnap): New variable.
[…]
>> +16S) and eukaryotes (5S, 5.8S, 28S, 18S). It takes FASTA DNA sequence as input,
>> +and write GFF3 as output. It uses the NHMMER tool that comes with HMMER for
>> +HMM searching in RNA:DNA style.")
>> + (license (list license:gpl3
>> + ;; The Rfam HMMs are under cc0, and the SILVA-derived HMMs are
>> + ;; academic-only.
>
> I don't think we can package the SILVA files. They are very much
> non-free according to the license text:
You’re right! Ben, could you delete them from the package in a snippet?
--
Ricardo
GPG: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC
http://elephly.net
next prev parent reply other threads:[~2016-12-04 16:23 UTC|newest]
Thread overview: 11+ messages / expand[flat|nested] mbox.gz Atom feed top
2016-12-03 10:38 [PATCH 1/4] gnu: Add perl-time-piece Ben Woodcroft
2016-12-03 10:38 ` [PATCH 2/4] gnu: Add ncbi-tools Ben Woodcroft
2016-12-03 19:19 ` Ricardo Wurmus
2016-12-03 19:30 ` Marius Bakke
2016-12-03 10:39 ` [PATCH 3/4] gnu: Add barrnap Ben Woodcroft
2016-12-03 19:20 ` Ricardo Wurmus
2016-12-03 19:36 ` Marius Bakke
2016-12-04 15:51 ` Ricardo Wurmus [this message]
2016-12-03 10:39 ` [PATCH 4/4] gnu: Add prokka Ben Woodcroft
2016-12-03 19:47 ` Marius Bakke
2016-12-03 18:55 ` [PATCH 1/4] gnu: Add perl-time-piece Marius Bakke
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