From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ricardo Wurmus Subject: Re: [PATCH 3/4] gnu: Add barrnap. Date: Sun, 04 Dec 2016 16:51:26 +0100 Message-ID: <87pol7bsld.fsf@elephly.net> References: <20161203103901.27770-1-donttrustben@gmail.com> <20161203103901.27770-3-donttrustben@gmail.com> <87twakbyaj.fsf@kirby.i-did-not-set--mail-host-address--so-tickle-me> Mime-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:54045) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1cDZZk-0006K4-In for guix-devel@gnu.org; Sun, 04 Dec 2016 11:23:41 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1cDZZh-0000iv-DY for guix-devel@gnu.org; Sun, 04 Dec 2016 11:23:40 -0500 Received: from sender163-mail.zoho.com ([74.201.84.163]:21365) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1cDZZh-0000iR-5N for guix-devel@gnu.org; Sun, 04 Dec 2016 11:23:37 -0500 In-reply-to: <87twakbyaj.fsf@kirby.i-did-not-set--mail-host-address--so-tickle-me> List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: Marius Bakke Cc: guix-devel@gnu.org Marius Bakke writes: > Ben Woodcroft writes: > >> * gnu/packages/bioinformatics.scm (barrnap): New variable. […] >> +16S) and eukaryotes (5S, 5.8S, 28S, 18S). It takes FASTA DNA sequence as input, >> +and write GFF3 as output. It uses the NHMMER tool that comes with HMMER for >> +HMM searching in RNA:DNA style.") >> + (license (list license:gpl3 >> + ;; The Rfam HMMs are under cc0, and the SILVA-derived HMMs are >> + ;; academic-only. > > I don't think we can package the SILVA files. They are very much > non-free according to the license text: You’re right! Ben, could you delete them from the package in a snippet? -- Ricardo GPG: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC http://elephly.net