* bug#61329: Info
@ 2023-02-06 13:36 ` Michela Francesconi
2023-02-08 10:07 ` Parnikkapore via Bug reports for GNU Guix
2023-02-08 13:57 ` Simon Tournier
0 siblings, 2 replies; 3+ messages in thread
From: Michela Francesconi @ 2023-02-06 13:36 UTC (permalink / raw)
To: 61329
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Hello,
I am using an ssh account that connects to an external server, i have
downloaded through guix some software like samtools and bedtools but when i
try to use them in my directory it gives me this error:
-bash: samtools: command not found
In my direcory, however, there is the directry guix.profile and if I go
into the bin folder of this, I have everything I downloaded and if I run:
./samtools
In that direcory, I can see it and works. But how I can use that software
packages in another folder? I try with:
PATH=$PATH:~/home/hub_galli/mfrancesconi/.guix-profile/bin export PATH
But it doesn't work. What I'm doing wrong? You can help me?
Thank you and best regards
Michela
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^ permalink raw reply [flat|nested] 3+ messages in thread
* bug#61329: Info
2023-02-06 13:36 ` bug#61329: Info Michela Francesconi
@ 2023-02-08 10:07 ` Parnikkapore via Bug reports for GNU Guix
2023-02-08 13:57 ` Simon Tournier
1 sibling, 0 replies; 3+ messages in thread
From: Parnikkapore via Bug reports for GNU Guix @ 2023-02-08 10:07 UTC (permalink / raw)
To: 61329
Hello, and welcome to Guix!
The "proper" way to run software installed using Guix is to activate the Guix profile; see https://guix.gnu.org/manual/en/html_node/Getting-Started.html for details. This sets $PATH for you, along with other environment variables that make sure e.g. new man pages can be found.
For setting $PATH manually, "~" is a shorthand for your home directory, so one of these two should work:
a)
PATH=$PATH:/home/hub_galli/mfrancesconi/.guix-profile/bin
export PATH
b)
PATH=$PATH:~/.guix-profile/bin
export PATH
Hope this helps!
^ permalink raw reply [flat|nested] 3+ messages in thread
* bug#61329: Info
2023-02-06 13:36 ` bug#61329: Info Michela Francesconi
2023-02-08 10:07 ` Parnikkapore via Bug reports for GNU Guix
@ 2023-02-08 13:57 ` Simon Tournier
1 sibling, 0 replies; 3+ messages in thread
From: Simon Tournier @ 2023-02-08 13:57 UTC (permalink / raw)
To: Michela Francesconi; +Cc: 61329
Hi,
On lun., 06 févr. 2023 at 14:36, Michela Francesconi <michelafrancesconi8@gmail.com> wrote:
> But it doesn't work. What I'm doing wrong? You can help me?
Welcome!
The purpose of the email list help-guix@gnu.org is for getting help.
Maybe it would be more suitable for asking help instead of reporting a
bug. :-)
I hope the message by Parnikkapore is answering your question.
Well, what do you think if this report is closed and instead the
discussion is happening in help-guix@gnu.org? Since I am missing if it
is related to a bug. ;-)
Cheers,
simon
^ permalink raw reply [flat|nested] 3+ messages in thread
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2023-02-06 13:36 ` bug#61329: Info Michela Francesconi
2023-02-08 10:07 ` Parnikkapore via Bug reports for GNU Guix
2023-02-08 13:57 ` Simon Tournier
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