* bug#44256: “guix import cran -a bioconductor FOO” downloads twice
@ 2020-10-27 13:55 zimoun
2021-02-25 15:28 ` zimoun
0 siblings, 1 reply; 2+ messages in thread
From: zimoun @ 2020-10-27 13:55 UTC (permalink / raw)
To: 44256
Dear,
--8<---------------cut here---------------start------------->8---
$ guix import cran -a bioconductor CATALYST
Starting download of /tmp/guix-file.OPtOW1
From https://bioconductor.org/packages/release/bioc/src/contrib/CATALYST_1.12.2.tar.gz...
…12.2.tar.gz 10.2MiB 567KiB/s 00:18 [##################] 100.0%
Starting download of /tmp/guix-file.V6sC1Z
From https://bioconductor.org/packages/release/bioc/src/contrib/CATALYST_1.12.2.tar.gz...
…12.2.tar.gz 10.2MiB 565KiB/s 00:19 [##################] 100.0%
--8<---------------cut here---------------end--------------->8---
I have not investigated more, if the issue is from the importer or from
the information provided by Bioconductor.
All the best,
simon
^ permalink raw reply [flat|nested] 2+ messages in thread
* bug#44256: “guix import cran -a bioconductor FOO” downloads twice
2020-10-27 13:55 bug#44256: “guix import cran -a bioconductor FOO” downloads twice zimoun
@ 2021-02-25 15:28 ` zimoun
0 siblings, 0 replies; 2+ messages in thread
From: zimoun @ 2021-02-25 15:28 UTC (permalink / raw)
To: 44256
Hi,
On Tue, 27 Oct 2020 at 14:55, zimoun <zimon.toutoune@gmail.com> wrote:
> $ guix import cran -a bioconductor CATALYST
>
> Starting download of /tmp/guix-file.OPtOW1
>>From https://bioconductor.org/packages/release/bioc/src/contrib/CATALYST_1.12.2.tar.gz...
> …12.2.tar.gz 10.2MiB 567KiB/s 00:18 [##################] 100.0%
>
> Starting download of /tmp/guix-file.V6sC1Z
>>From https://bioconductor.org/packages/release/bioc/src/contrib/CATALYST_1.12.2.tar.gz...
> …12.2.tar.gz 10.2MiB 565KiB/s 00:19 [##################] 100.0%
>
> I have not investigated more, if the issue is from the importer or from
> the information provided by Bioconductor.
It comes from ’cran->guix-package’ in (guix import cran):
--8<---------------cut here---------------start------------->8---
(let ((description (fetch-description repo package-name)))
(if description
(description->package repo description)
--8<---------------cut here---------------end--------------->8---
where ’fetch-description’ effectively downloads but then
’description->package’ downloads again:
--8<---------------cut here---------------start------------->8---
(source (download source-url #:method (cond
(git? 'git)
(hg? 'hg)
(else #f))))
--8<---------------cut here---------------end--------------->8---
This second download is not necessary. The fix needs some care with the
different repositories.
Cheers,
simon
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2020-10-27 13:55 bug#44256: “guix import cran -a bioconductor FOO” downloads twice zimoun
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