* Warnings while installing org-ref
@ 2017-05-26 13:24 Lars Bjørndal
2017-05-26 13:41 ` John Kitchin
2017-05-26 20:06 ` John Kitchin
0 siblings, 2 replies; 7+ messages in thread
From: Lars Bjørndal @ 2017-05-26 13:24 UTC (permalink / raw)
To: emacs-orgmode@gnu.org
I installed org-ref from Elpa, and I got some warnings. Emacs version:
GNU Emacs 25.2.1 (x86_64-redhat-linux-gnu, GTK+ Version 3.20.10) of 2017-05-02
I'm not sure how critical these error messages are.
Fri May 26 14:59:37 2017
Entering directory `/home/tstl/.emacs.d/elpa/key-chord-20160227.438/'
In key-chord-input-method:
key-chord.el:341:16:Warning: sit-for called with 3 arguments, but
accepts only
1-2
i May 26 14:59:45 2017
Entering directory `/home/tstl/.emacs.d/elpa/helm-core-20170526.36/'
In helm-position:
helm-lib.el:388:14:Warning: macro `helm-position' defined too late
In end of data:
helm-lib.el:1006:1:Warning: the following functions are not known to be
defined\
:
helm-interpret-value, helm-get-current-source
Compiling file
/home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/bibtex-comple\
tion.el at Fri May 26 14:59:54 2017
Entering directory `/home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/'
In end of data:
bibtex-completion.el:1210:1:Warning: the following functions are not
known to b\
e defined:
reftex-what-macro, org-find-property,
reftex-locate-bibliography-files
Entering directory `/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/'
In end of data:
doi-utils.el:1361:1:Warning: the following functions are not known to be
define\
d:
org-ref-find-bibliography, reftex-get-bib-field,
org-ref-bib-citation
Compiling file
/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-bibtex.el\
at Fri May 26 14:59:57 2017
In org-ref-bibtex-assoc-pdf-with-entry:
org-ref-bibtex.el:728:25:Warning: reference to free variable
`org-ref-pdf-directory'
In orhc-bibtex-field-formatter:
org-ref-bibtex.el:1092:27:Warning: reference to free variable
`org-ref-pdf-directory'
org-ref-bibtex.el:1098:27:Warning: reference to free variable
`org-ref-notes-directory'
In end of data:
org-ref-bibtex.el:1324:1:Warning: the following functions are not known
to be d\
efined:
reftex-get-bib-field, org-ref-find-bibliography
Compiling file
/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-citeproc.\
el at Fri May 26 14:59:57 2017
In end of data:
org-ref-citeproc.el:919:1:Warning: the function
`org-ref-get-bibtex-key-and-file' is not known to be defined.
Compiling file
/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-core.el a\
t Fri May 26 14:59:57 2017
In org-ref-update-pre-post-text:
org-ref-core.el:3259:16:Warning: `delete-backward-char' is for
interactive use
only; use `delete-char' instead.
org-ref-core.el:3260:12:Warning: `delete-backward-char' is for
interactive use
only; use `delete-char' instead.
In end of data:
org-ref-core.el:3498:1:Warning: the following functions are not known to
be def\
ined:
org-ref-match-next-cite-link, org-ref-match-next-label-link,
org-ref-match-next-ref-link,
org-ref-make-org-link-cite-key-visible,
org-in-commented-heading-p
Compiling file
/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm-bibt\
ex.el at Fri May 26 14:59:58 2017
In org-ref-format-citation:
org-ref-helm-bibtex.el:308:22:Warning: assignment to free variable `end'
org-ref-helm-bibtex.el:313:37:Warning: assignment to free variable
`path'
org-ref-helm-bibtex.el:313:37:Warning: reference to free variable `end'
org-ref-helm-bibtex.el:311:16:Warning: looking-back called with 1
argument,
but requires 2-3
org-ref-helm-bibtex.el:313:18:Warning: reference to free variable
`path'
In org-ref-helm-load-completions-async:
org-ref-helm-bibtex.el:367:22:Warning: assignment to free variable
`bibtex-completion-cached-candidates'
org-ref-helm-bibtex.el:371:20:Warning: assignment to free variable
`bibtex-completion-bibliography-hash'
In org-ref-browser:
org-ref-helm-bibtex.el:681:20:Warning: `show-all' is an obsolete
function (as
of 25.1); use `outline-show-all' instead.
org-ref-helm-bibtex.el:712:61:Warning: assignment to free variable
`count-key-pos'
org-ref-helm-bibtex.el:715:68:Warning: reference to free
variable
`count-key-pos'
Compiling file
/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm.el a\
t Fri May 26 14:59:58 2017
In org-ref:
org-ref-helm.el:289:78:Error: `add-to-list' can't use lexical var
`matches';
use `push' or `cl-pushnew'
org-ref-helm.el:317:54:Error: `add-to-list' can't use lexical var
`matches';
use `push' or `cl-pushnew'
org-ref-helm.el:306:39:Error: `add-to-list' can't use lexical
var `matches';
use `push' or `cl-pushnew'
org-ref-helm.el:380:47:Warning: reference to free variable
`org-latex-prefer-user-labels'
Compiling file
/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-pdf.el at\
Fri May 26 14:59:59 2017
In end of data:
org-ref-pdf.el:248:1:Warning: the following functions are not known to
be defin\
ed:
pdf-view-assert-active-region, pdf-view-active-region-text,
pdf-view-deactivate-region
Lars
^ permalink raw reply [flat|nested] 7+ messages in thread
* Re: Warnings while installing org-ref
2017-05-26 13:24 Warnings while installing org-ref Lars Bjørndal
@ 2017-05-26 13:41 ` John Kitchin
2017-05-26 20:06 ` John Kitchin
1 sibling, 0 replies; 7+ messages in thread
From: John Kitchin @ 2017-05-26 13:41 UTC (permalink / raw)
To: Lars Bjørndal; +Cc: emacs-orgmode@gnu.org
I don't think any of those are critical.
Lars Bjørndal writes:
> I installed org-ref from Elpa, and I got some warnings. Emacs version:
>
> GNU Emacs 25.2.1 (x86_64-redhat-linux-gnu, GTK+ Version 3.20.10) of 2017-05-02
>
> I'm not sure how critical these error messages are.
>
> Fri May 26 14:59:37 2017
> Entering directory `/home/tstl/.emacs.d/elpa/key-chord-20160227.438/'
>
> In key-chord-input-method:
> key-chord.el:341:16:Warning: sit-for called with 3 arguments, but
> accepts only
> 1-2
> i May 26 14:59:45 2017
> Entering directory `/home/tstl/.emacs.d/elpa/helm-core-20170526.36/'
>
> In helm-position:
> helm-lib.el:388:14:Warning: macro `helm-position' defined too late
>
> In end of data:
> helm-lib.el:1006:1:Warning: the following functions are not known to be
> defined\
> :
> helm-interpret-value, helm-get-current-source
>
> Compiling file
> /home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/bibtex-comple\
> tion.el at Fri May 26 14:59:54 2017
> Entering directory `/home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/'
>
> In end of data:
> bibtex-completion.el:1210:1:Warning: the following functions are not
> known to b\
> e defined:
> reftex-what-macro, org-find-property,
> reftex-locate-bibliography-files
>
> Entering directory `/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/'
>
> In end of data:
> doi-utils.el:1361:1:Warning: the following functions are not known to be
> define\
> d:
> org-ref-find-bibliography, reftex-get-bib-field,
> org-ref-bib-citation
>
> Compiling file
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-bibtex.el\
> at Fri May 26 14:59:57 2017
>
> In org-ref-bibtex-assoc-pdf-with-entry:
> org-ref-bibtex.el:728:25:Warning: reference to free variable
> `org-ref-pdf-directory'
>
> In orhc-bibtex-field-formatter:
> org-ref-bibtex.el:1092:27:Warning: reference to free variable
> `org-ref-pdf-directory'
> org-ref-bibtex.el:1098:27:Warning: reference to free variable
> `org-ref-notes-directory'
>
> In end of data:
> org-ref-bibtex.el:1324:1:Warning: the following functions are not known
> to be d\
> efined:
> reftex-get-bib-field, org-ref-find-bibliography
>
> Compiling file
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-citeproc.\
> el at Fri May 26 14:59:57 2017
>
> In end of data:
> org-ref-citeproc.el:919:1:Warning: the function
> `org-ref-get-bibtex-key-and-file' is not known to be defined.
>
> Compiling file
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-core.el a\
> t Fri May 26 14:59:57 2017
>
> In org-ref-update-pre-post-text:
> org-ref-core.el:3259:16:Warning: `delete-backward-char' is for
> interactive use
> only; use `delete-char' instead.
> org-ref-core.el:3260:12:Warning: `delete-backward-char' is for
> interactive use
> only; use `delete-char' instead.
>
> In end of data:
> org-ref-core.el:3498:1:Warning: the following functions are not known to
> be def\
> ined:
> org-ref-match-next-cite-link, org-ref-match-next-label-link,
> org-ref-match-next-ref-link,
> org-ref-make-org-link-cite-key-visible,
> org-in-commented-heading-p
>
> Compiling file
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm-bibt\
> ex.el at Fri May 26 14:59:58 2017
>
> In org-ref-format-citation:
> org-ref-helm-bibtex.el:308:22:Warning: assignment to free variable `end'
> org-ref-helm-bibtex.el:313:37:Warning: assignment to free variable
> `path'
> org-ref-helm-bibtex.el:313:37:Warning: reference to free variable `end'
> org-ref-helm-bibtex.el:311:16:Warning: looking-back called with 1
> argument,
> but requires 2-3
> org-ref-helm-bibtex.el:313:18:Warning: reference to free variable
> `path'
>
> In org-ref-helm-load-completions-async:
> org-ref-helm-bibtex.el:367:22:Warning: assignment to free variable
> `bibtex-completion-cached-candidates'
> org-ref-helm-bibtex.el:371:20:Warning: assignment to free variable
> `bibtex-completion-bibliography-hash'
>
> In org-ref-browser:
> org-ref-helm-bibtex.el:681:20:Warning: `show-all' is an obsolete
> function (as
> of 25.1); use `outline-show-all' instead.
> org-ref-helm-bibtex.el:712:61:Warning: assignment to free variable
> `count-key-pos'
> org-ref-helm-bibtex.el:715:68:Warning: reference to free
> variable
> `count-key-pos'
>
> Compiling file
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm.el a\
> t Fri May 26 14:59:58 2017
>
> In org-ref:
> org-ref-helm.el:289:78:Error: `add-to-list' can't use lexical var
> `matches';
> use `push' or `cl-pushnew'
> org-ref-helm.el:317:54:Error: `add-to-list' can't use lexical var
> `matches';
> use `push' or `cl-pushnew'
> org-ref-helm.el:306:39:Error: `add-to-list' can't use lexical
> var `matches';
> use `push' or `cl-pushnew'
> org-ref-helm.el:380:47:Warning: reference to free variable
> `org-latex-prefer-user-labels'
>
> Compiling file
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-pdf.el at\
> Fri May 26 14:59:59 2017
>
> In end of data:
> org-ref-pdf.el:248:1:Warning: the following functions are not known to
> be defin\
> ed:
> pdf-view-assert-active-region, pdf-view-active-region-text,
> pdf-view-deactivate-region
>
> Lars
--
Professor John Kitchin
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu
^ permalink raw reply [flat|nested] 7+ messages in thread
* Re: Warnings while installing org-ref
2017-05-26 13:24 Warnings while installing org-ref Lars Bjørndal
2017-05-26 13:41 ` John Kitchin
@ 2017-05-26 20:06 ` John Kitchin
2017-05-27 20:51 ` Error exporting org-ref.org to LaTeX (was: Re: Warnings while installing org-ref) Lars Bjørndal
1 sibling, 1 reply; 7+ messages in thread
From: John Kitchin @ 2017-05-26 20:06 UTC (permalink / raw)
To: Lars Bjørndal; +Cc: emacs-orgmode@gnu.org
I pushed a bunch of commits today to clean up a lot of these. There are
still a few that I don't know how to get rid of, but it should be a lot
cleaner now.
Lars Bjørndal writes:
> I installed org-ref from Elpa, and I got some warnings. Emacs version:
>
> GNU Emacs 25.2.1 (x86_64-redhat-linux-gnu, GTK+ Version 3.20.10) of 2017-05-02
>
> I'm not sure how critical these error messages are.
>
> Fri May 26 14:59:37 2017
> Entering directory `/home/tstl/.emacs.d/elpa/key-chord-20160227.438/'
>
> In key-chord-input-method:
> key-chord.el:341:16:Warning: sit-for called with 3 arguments, but
> accepts only
> 1-2
> i May 26 14:59:45 2017
> Entering directory `/home/tstl/.emacs.d/elpa/helm-core-20170526.36/'
>
> In helm-position:
> helm-lib.el:388:14:Warning: macro `helm-position' defined too late
>
> In end of data:
> helm-lib.el:1006:1:Warning: the following functions are not known to be
> defined\
> :
> helm-interpret-value, helm-get-current-source
>
> Compiling file
> /home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/bibtex-comple\
> tion.el at Fri May 26 14:59:54 2017
> Entering directory `/home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/'
>
> In end of data:
> bibtex-completion.el:1210:1:Warning: the following functions are not
> known to b\
> e defined:
> reftex-what-macro, org-find-property,
> reftex-locate-bibliography-files
>
> Entering directory `/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/'
>
> In end of data:
> doi-utils.el:1361:1:Warning: the following functions are not known to be
> define\
> d:
> org-ref-find-bibliography, reftex-get-bib-field,
> org-ref-bib-citation
>
> Compiling file
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-bibtex.el\
> at Fri May 26 14:59:57 2017
>
> In org-ref-bibtex-assoc-pdf-with-entry:
> org-ref-bibtex.el:728:25:Warning: reference to free variable
> `org-ref-pdf-directory'
>
> In orhc-bibtex-field-formatter:
> org-ref-bibtex.el:1092:27:Warning: reference to free variable
> `org-ref-pdf-directory'
> org-ref-bibtex.el:1098:27:Warning: reference to free variable
> `org-ref-notes-directory'
>
> In end of data:
> org-ref-bibtex.el:1324:1:Warning: the following functions are not known
> to be d\
> efined:
> reftex-get-bib-field, org-ref-find-bibliography
>
> Compiling file
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-citeproc.\
> el at Fri May 26 14:59:57 2017
>
> In end of data:
> org-ref-citeproc.el:919:1:Warning: the function
> `org-ref-get-bibtex-key-and-file' is not known to be defined.
>
> Compiling file
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-core.el a\
> t Fri May 26 14:59:57 2017
>
> In org-ref-update-pre-post-text:
> org-ref-core.el:3259:16:Warning: `delete-backward-char' is for
> interactive use
> only; use `delete-char' instead.
> org-ref-core.el:3260:12:Warning: `delete-backward-char' is for
> interactive use
> only; use `delete-char' instead.
>
> In end of data:
> org-ref-core.el:3498:1:Warning: the following functions are not known to
> be def\
> ined:
> org-ref-match-next-cite-link, org-ref-match-next-label-link,
> org-ref-match-next-ref-link,
> org-ref-make-org-link-cite-key-visible,
> org-in-commented-heading-p
>
> Compiling file
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm-bibt\
> ex.el at Fri May 26 14:59:58 2017
>
> In org-ref-format-citation:
> org-ref-helm-bibtex.el:308:22:Warning: assignment to free variable `end'
> org-ref-helm-bibtex.el:313:37:Warning: assignment to free variable
> `path'
> org-ref-helm-bibtex.el:313:37:Warning: reference to free variable `end'
> org-ref-helm-bibtex.el:311:16:Warning: looking-back called with 1
> argument,
> but requires 2-3
> org-ref-helm-bibtex.el:313:18:Warning: reference to free variable
> `path'
>
> In org-ref-helm-load-completions-async:
> org-ref-helm-bibtex.el:367:22:Warning: assignment to free variable
> `bibtex-completion-cached-candidates'
> org-ref-helm-bibtex.el:371:20:Warning: assignment to free variable
> `bibtex-completion-bibliography-hash'
>
> In org-ref-browser:
> org-ref-helm-bibtex.el:681:20:Warning: `show-all' is an obsolete
> function (as
> of 25.1); use `outline-show-all' instead.
> org-ref-helm-bibtex.el:712:61:Warning: assignment to free variable
> `count-key-pos'
> org-ref-helm-bibtex.el:715:68:Warning: reference to free
> variable
> `count-key-pos'
>
> Compiling file
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm.el a\
> t Fri May 26 14:59:58 2017
>
> In org-ref:
> org-ref-helm.el:289:78:Error: `add-to-list' can't use lexical var
> `matches';
> use `push' or `cl-pushnew'
> org-ref-helm.el:317:54:Error: `add-to-list' can't use lexical var
> `matches';
> use `push' or `cl-pushnew'
> org-ref-helm.el:306:39:Error: `add-to-list' can't use lexical
> var `matches';
> use `push' or `cl-pushnew'
> org-ref-helm.el:380:47:Warning: reference to free variable
> `org-latex-prefer-user-labels'
>
> Compiling file
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-pdf.el at\
> Fri May 26 14:59:59 2017
>
> In end of data:
> org-ref-pdf.el:248:1:Warning: the following functions are not known to
> be defin\
> ed:
> pdf-view-assert-active-region, pdf-view-active-region-text,
> pdf-view-deactivate-region
>
> Lars
--
Professor John Kitchin
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu
^ permalink raw reply [flat|nested] 7+ messages in thread
* Error exporting org-ref.org to LaTeX (was: Re: Warnings while installing org-ref)
2017-05-26 20:06 ` John Kitchin
@ 2017-05-27 20:51 ` Lars Bjørndal
2017-05-27 21:41 ` John Kitchin
0 siblings, 1 reply; 7+ messages in thread
From: Lars Bjørndal @ 2017-05-27 20:51 UTC (permalink / raw)
To: emacs-orgmode@gnu.org
On Fri, May 26, 2017 at 04:06:52PM -0400, John Kitchin wrote:
> I pushed a bunch of commits today to clean up a lot of these. There are
> still a few that I don't know how to get rid of, but it should be a lot
> cleaner now.
Thanks a lot.
To learn Org, Org-ref and exports, I tried to export the org-ref.org
to LaTeX. The .tex file is produced, but I get the following error
message:
user-error: Unable to resolve link: "id:212B487E-CC38-4BDF-9F0E-6993845AF49B"
What does that mean?
Thanks and regards, Lars
> Lars Bjørndal writes:
>
> > I installed org-ref from Elpa, and I got some warnings. Emacs version:
> >
> > GNU Emacs 25.2.1 (x86_64-redhat-linux-gnu, GTK+ Version 3.20.10) of 2017-05-02
> >
> > I'm not sure how critical these error messages are.
> >
> > Fri May 26 14:59:37 2017
> > Entering directory `/home/tstl/.emacs.d/elpa/key-chord-20160227.438/'
> >
> > In key-chord-input-method:
> > key-chord.el:341:16:Warning: sit-for called with 3 arguments, but
> > accepts only
> > 1-2
> > i May 26 14:59:45 2017
> > Entering directory `/home/tstl/.emacs.d/elpa/helm-core-20170526.36/'
> >
> > In helm-position:
> > helm-lib.el:388:14:Warning: macro `helm-position' defined too late
> >
> > In end of data:
> > helm-lib.el:1006:1:Warning: the following functions are not known to be
> > defined\
> > :
> > helm-interpret-value, helm-get-current-source
> >
> > Compiling file
> > /home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/bibtex-comple\
> > tion.el at Fri May 26 14:59:54 2017
> > Entering directory `/home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/'
> >
> > In end of data:
> > bibtex-completion.el:1210:1:Warning: the following functions are not
> > known to b\
> > e defined:
> > reftex-what-macro, org-find-property,
> > reftex-locate-bibliography-files
> >
> > Entering directory `/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/'
> >
> > In end of data:
> > doi-utils.el:1361:1:Warning: the following functions are not known to be
> > define\
> > d:
> > org-ref-find-bibliography, reftex-get-bib-field,
> > org-ref-bib-citation
> >
> > Compiling file
> > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-bibtex.el\
> > at Fri May 26 14:59:57 2017
> >
> > In org-ref-bibtex-assoc-pdf-with-entry:
> > org-ref-bibtex.el:728:25:Warning: reference to free variable
> > `org-ref-pdf-directory'
> >
> > In orhc-bibtex-field-formatter:
> > org-ref-bibtex.el:1092:27:Warning: reference to free variable
> > `org-ref-pdf-directory'
> > org-ref-bibtex.el:1098:27:Warning: reference to free variable
> > `org-ref-notes-directory'
> >
> > In end of data:
> > org-ref-bibtex.el:1324:1:Warning: the following functions are not known
> > to be d\
> > efined:
> > reftex-get-bib-field, org-ref-find-bibliography
> >
> > Compiling file
> > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-citeproc.\
> > el at Fri May 26 14:59:57 2017
> >
> > In end of data:
> > org-ref-citeproc.el:919:1:Warning: the function
> > `org-ref-get-bibtex-key-and-file' is not known to be defined.
> >
> > Compiling file
> > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-core.el a\
> > t Fri May 26 14:59:57 2017
> >
> > In org-ref-update-pre-post-text:
> > org-ref-core.el:3259:16:Warning: `delete-backward-char' is for
> > interactive use
> > only; use `delete-char' instead.
> > org-ref-core.el:3260:12:Warning: `delete-backward-char' is for
> > interactive use
> > only; use `delete-char' instead.
> >
> > In end of data:
> > org-ref-core.el:3498:1:Warning: the following functions are not known to
> > be def\
> > ined:
> > org-ref-match-next-cite-link, org-ref-match-next-label-link,
> > org-ref-match-next-ref-link,
> > org-ref-make-org-link-cite-key-visible,
> > org-in-commented-heading-p
> >
> > Compiling file
> > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm-bibt\
> > ex.el at Fri May 26 14:59:58 2017
> >
> > In org-ref-format-citation:
> > org-ref-helm-bibtex.el:308:22:Warning: assignment to free variable `end'
> > org-ref-helm-bibtex.el:313:37:Warning: assignment to free variable
> > `path'
> > org-ref-helm-bibtex.el:313:37:Warning: reference to free variable `end'
> > org-ref-helm-bibtex.el:311:16:Warning: looking-back called with 1
> > argument,
> > but requires 2-3
> > org-ref-helm-bibtex.el:313:18:Warning: reference to free variable
> > `path'
> >
> > In org-ref-helm-load-completions-async:
> > org-ref-helm-bibtex.el:367:22:Warning: assignment to free variable
> > `bibtex-completion-cached-candidates'
> > org-ref-helm-bibtex.el:371:20:Warning: assignment to free variable
> > `bibtex-completion-bibliography-hash'
> >
> > In org-ref-browser:
> > org-ref-helm-bibtex.el:681:20:Warning: `show-all' is an obsolete
> > function (as
> > of 25.1); use `outline-show-all' instead.
> > org-ref-helm-bibtex.el:712:61:Warning: assignment to free variable
> > `count-key-pos'
> > org-ref-helm-bibtex.el:715:68:Warning: reference to free
> > variable
> > `count-key-pos'
> >
> > Compiling file
> > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm.el a\
> > t Fri May 26 14:59:58 2017
> >
> > In org-ref:
> > org-ref-helm.el:289:78:Error: `add-to-list' can't use lexical var
> > `matches';
> > use `push' or `cl-pushnew'
> > org-ref-helm.el:317:54:Error: `add-to-list' can't use lexical var
> > `matches';
> > use `push' or `cl-pushnew'
> > org-ref-helm.el:306:39:Error: `add-to-list' can't use lexical
> > var `matches';
> > use `push' or `cl-pushnew'
> > org-ref-helm.el:380:47:Warning: reference to free variable
> > `org-latex-prefer-user-labels'
> >
> > Compiling file
> > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-pdf.el at\
> > Fri May 26 14:59:59 2017
> >
> > In end of data:
> > org-ref-pdf.el:248:1:Warning: the following functions are not known to
> > be defin\
> > ed:
> > pdf-view-assert-active-region, pdf-view-active-region-text,
> > pdf-view-deactivate-region
> >
> > Lars
>
>
> --
> Professor John Kitchin
> Doherty Hall A207F
> Department of Chemical Engineering
> Carnegie Mellon University
> Pittsburgh, PA 15213
> 412-268-7803
> @johnkitchin
> http://kitchingroup.cheme.cmu.edu
>
^ permalink raw reply [flat|nested] 7+ messages in thread
* Re: Error exporting org-ref.org to LaTeX (was: Re: Warnings while installing org-ref)
2017-05-27 20:51 ` Error exporting org-ref.org to LaTeX (was: Re: Warnings while installing org-ref) Lars Bjørndal
@ 2017-05-27 21:41 ` John Kitchin
2017-05-28 8:09 ` Lars Bjørndal
0 siblings, 1 reply; 7+ messages in thread
From: John Kitchin @ 2017-05-27 21:41 UTC (permalink / raw)
To: Lars Bjørndal, emacs-orgmode@gnu.org
[-- Attachment #1: Type: text/plain, Size: 7518 bytes --]
You might have to require org-id and a few other org-ref libs for wos,
Scopus and arxiv links. See the notes near the end of that document. I am
traveling sans emacs right now so I don't have the exact place to look, but
it is in a section on alternate builds I think.
On Sat, May 27, 2017 at 4:52 PM Lars Bjørndal <lars@lamasti.net> wrote:
> On Fri, May 26, 2017 at 04:06:52PM -0400, John Kitchin wrote:
> > I pushed a bunch of commits today to clean up a lot of these. There are
> > still a few that I don't know how to get rid of, but it should be a lot
> > cleaner now.
>
> Thanks a lot.
>
> To learn Org, Org-ref and exports, I tried to export the org-ref.org
> to LaTeX. The .tex file is produced, but I get the following error
> message:
>
> user-error: Unable to resolve link:
> "id:212B487E-CC38-4BDF-9F0E-6993845AF49B"
>
> What does that mean?
>
> Thanks and regards, Lars
>
> > Lars Bjørndal writes:
> >
> > > I installed org-ref from Elpa, and I got some warnings. Emacs version:
> > >
> > > GNU Emacs 25.2.1 (x86_64-redhat-linux-gnu, GTK+ Version 3.20.10) of
> 2017-05-02
> > >
> > > I'm not sure how critical these error messages are.
> > >
> > > Fri May 26 14:59:37 2017
> > > Entering directory `/home/tstl/.emacs.d/elpa/key-chord-20160227.438/'
> > >
> > > In key-chord-input-method:
> > > key-chord.el:341:16:Warning: sit-for called with 3 arguments, but
> > > accepts only
> > > 1-2
> > > i May 26 14:59:45 2017
> > > Entering directory `/home/tstl/.emacs.d/elpa/helm-core-20170526.36/'
> > >
> > > In helm-position:
> > > helm-lib.el:388:14:Warning: macro `helm-position' defined too late
> > >
> > > In end of data:
> > > helm-lib.el:1006:1:Warning: the following functions are not known to be
> > > defined\
> > > :
> > > helm-interpret-value, helm-get-current-source
> > >
> > > Compiling file
> > > /home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/bibtex-comple\
> > > tion.el at Fri May 26 14:59:54 2017
> > > Entering directory
> `/home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/'
> > >
> > > In end of data:
> > > bibtex-completion.el:1210:1:Warning: the following functions are not
> > > known to b\
> > > e defined:
> > > reftex-what-macro, org-find-property,
> > > reftex-locate-bibliography-files
> > >
> > > Entering directory `/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/'
> > >
> > > In end of data:
> > > doi-utils.el:1361:1:Warning: the following functions are not known to
> be
> > > define\
> > > d:
> > > org-ref-find-bibliography, reftex-get-bib-field,
> > > org-ref-bib-citation
> > >
> > > Compiling file
> > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-bibtex.el\
> > > at Fri May 26 14:59:57 2017
> > >
> > > In org-ref-bibtex-assoc-pdf-with-entry:
> > > org-ref-bibtex.el:728:25:Warning: reference to free variable
> > > `org-ref-pdf-directory'
> > >
> > > In orhc-bibtex-field-formatter:
> > > org-ref-bibtex.el:1092:27:Warning: reference to free variable
> > > `org-ref-pdf-directory'
> > > org-ref-bibtex.el:1098:27:Warning: reference to free variable
> > > `org-ref-notes-directory'
> > >
> > > In end of data:
> > > org-ref-bibtex.el:1324:1:Warning: the following functions are not known
> > > to be d\
> > > efined:
> > > reftex-get-bib-field, org-ref-find-bibliography
> > >
> > > Compiling file
> > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-citeproc.\
> > > el at Fri May 26 14:59:57 2017
> > >
> > > In end of data:
> > > org-ref-citeproc.el:919:1:Warning: the function
> > > `org-ref-get-bibtex-key-and-file' is not known to be defined.
> > >
> > > Compiling file
> > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-core.el a\
> > > t Fri May 26 14:59:57 2017
> > >
> > > In org-ref-update-pre-post-text:
> > > org-ref-core.el:3259:16:Warning: `delete-backward-char' is for
> > > interactive use
> > > only; use `delete-char' instead.
> > > org-ref-core.el:3260:12:Warning: `delete-backward-char' is for
> > > interactive use
> > > only; use `delete-char' instead.
> > >
> > > In end of data:
> > > org-ref-core.el:3498:1:Warning: the following functions are not known
> to
> > > be def\
> > > ined:
> > > org-ref-match-next-cite-link, org-ref-match-next-label-link,
> > > org-ref-match-next-ref-link,
> > > org-ref-make-org-link-cite-key-visible,
> > > org-in-commented-heading-p
> > >
> > > Compiling file
> > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm-bibt\
> > > ex.el at Fri May 26 14:59:58 2017
> > >
> > > In org-ref-format-citation:
> > > org-ref-helm-bibtex.el:308:22:Warning: assignment to free variable
> `end'
> > > org-ref-helm-bibtex.el:313:37:Warning: assignment to free variable
> > > `path'
> > > org-ref-helm-bibtex.el:313:37:Warning: reference to free variable `end'
> > > org-ref-helm-bibtex.el:311:16:Warning: looking-back called with 1
> > > argument,
> > > but requires 2-3
> > > org-ref-helm-bibtex.el:313:18:Warning: reference to free variable
> > > `path'
> > >
> > > In org-ref-helm-load-completions-async:
> > > org-ref-helm-bibtex.el:367:22:Warning: assignment to free variable
> > > `bibtex-completion-cached-candidates'
> > > org-ref-helm-bibtex.el:371:20:Warning: assignment to free variable
> > > `bibtex-completion-bibliography-hash'
> > >
> > > In org-ref-browser:
> > > org-ref-helm-bibtex.el:681:20:Warning: `show-all' is an obsolete
> > > function (as
> > > of 25.1); use `outline-show-all' instead.
> > > org-ref-helm-bibtex.el:712:61:Warning: assignment to free variable
> > > `count-key-pos'
> > > org-ref-helm-bibtex.el:715:68:Warning: reference to free
> > > variable
> > > `count-key-pos'
> > >
> > > Compiling file
> > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm.el a\
> > > t Fri May 26 14:59:58 2017
> > >
> > > In org-ref:
> > > org-ref-helm.el:289:78:Error: `add-to-list' can't use lexical var
> > > `matches';
> > > use `push' or `cl-pushnew'
> > > org-ref-helm.el:317:54:Error: `add-to-list' can't use lexical var
> > > `matches';
> > > use `push' or `cl-pushnew'
> > > org-ref-helm.el:306:39:Error: `add-to-list' can't use lexical
> > > var `matches';
> > > use `push' or `cl-pushnew'
> > > org-ref-helm.el:380:47:Warning: reference to free variable
> > > `org-latex-prefer-user-labels'
> > >
> > > Compiling file
> > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-pdf.el at\
> > > Fri May 26 14:59:59 2017
> > >
> > > In end of data:
> > > org-ref-pdf.el:248:1:Warning: the following functions are not known to
> > > be defin\
> > > ed:
> > > pdf-view-assert-active-region, pdf-view-active-region-text,
> > > pdf-view-deactivate-region
> > >
> > > Lars
> >
> >
> > --
> > Professor John Kitchin
> > Doherty Hall A207F
> > Department of Chemical Engineering
> > Carnegie Mellon University
> > Pittsburgh, PA 15213
> > 412-268-7803
> > @johnkitchin
> > http://kitchingroup.cheme.cmu.edu
> >
>
> --
John
-----------------------------------
Professor John Kitchin
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu
[-- Attachment #2: Type: text/html, Size: 9845 bytes --]
^ permalink raw reply [flat|nested] 7+ messages in thread
* Re: Error exporting org-ref.org to LaTeX (was: Re: Warnings while installing org-ref)
2017-05-27 21:41 ` John Kitchin
@ 2017-05-28 8:09 ` Lars Bjørndal
2017-06-02 19:45 ` John Kitchin
0 siblings, 1 reply; 7+ messages in thread
From: Lars Bjørndal @ 2017-05-28 8:09 UTC (permalink / raw)
To: emacs-orgmode@gnu.org
Thank you. You wrote:
> You might have to require org-id and a few other org-ref libs for wos,
> Scopus and arxiv links. See the notes near the end of that document. I
> am traveling sans emacs right now so I don't have the exact place to
> look, but it is in a section on alternate builds I think.
Yes, I got it.
Please note that `org-id' is not mentioned in the org-ref.org file.
The .tex file is now prduced without errors/warnings. The pdf is
produced as well, but with warnings. Some of them are:
Package glossaries Warning: No \printglossary or \printglossaries
found.
(Remove \makeglossaries if you don't want any glossaries.)
This document will not have a glossary.
LaTeX Warning: There were undefined references.
Thanks and regards, Lars
> On Sat, May 27, 2017 at 4:52 PM Lars Bjørndal <[1]lars@lamasti.net>
> wrote:
>
> On Fri, May 26, 2017 at 04:06:52PM -0400, John Kitchin wrote:
> > I pushed a bunch of commits today to clean up a lot of these.
> There are
> > still a few that I don't know how to get rid of, but it should be
> a lot
> > cleaner now.
> Thanks a lot.
> To learn Org, Org-ref and exports, I tried to export the
> [2]org-ref.org
> to LaTeX. The .tex file is produced, but I get the following error
> message:
> user-error: Unable to resolve link:
> "id:212B487E-CC38-4BDF-9F0E-6993845AF49B"
> What does that mean?
> Thanks and regards, Lars
> > Lars Bjørndal writes:
> >
> > > I installed org-ref from Elpa, and I got some warnings. Emacs
> version:
> > >
> > > GNU Emacs 25.2.1 (x86_64-redhat-linux-gnu, GTK+ Version 3.20.10)
> of 2017-05-02
> > >
> > > I'm not sure how critical these error messages are.
> > >
> > > Fri May 26 14:59:37 2017
> > > Entering directory
> `/home/tstl/.emacs.d/elpa/key-chord-20160227.438/'
> > >
> > > In key-chord-input-method:
> > > key-chord.el:341:16:Warning: sit-for called with 3 arguments,
> but
> > > accepts only
> > > 1-2
> > > i May 26 14:59:45 2017
> > > Entering directory
> `/home/tstl/.emacs.d/elpa/helm-core-20170526.36/'
> > >
> > > In helm-position:
> > > helm-lib.el:388:14:Warning: macro `helm-position' defined too
> late
> > >
> > > In end of data:
> > > helm-lib.el:1006:1:Warning: the following functions are not
> known to be
> > > defined\
> > > :
> > > helm-interpret-value, helm-get-current-source
> > >
> > > Compiling file
> > >
> /home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/bibtex-comple\
> > > tion.el at Fri May 26 14:59:54 2017
> > > Entering directory
> `/home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/'
> > >
> > > In end of data:
> > > bibtex-completion.el:1210:1:Warning: the following functions are
> not
> > > known to b\
> > > e defined:
> > > reftex-what-macro, org-find-property,
> > > reftex-locate-bibliography-files
> > >
> > > Entering directory
> `/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/'
> > >
> > > In end of data:
> > > doi-utils.el:1361:1:Warning: the following functions are not
> known to be
> > > define\
> > > d:
> > > org-ref-find-bibliography, reftex-get-bib-field,
> > > org-ref-bib-citation
> > >
> > > Compiling file
> > >
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-bibtex.el\
> > > at Fri May 26 14:59:57 2017
> > >
> > > In org-ref-bibtex-assoc-pdf-with-entry:
> > > org-ref-bibtex.el:728:25:Warning: reference to free variable
> > > `org-ref-pdf-directory'
> > >
> > > In orhc-bibtex-field-formatter:
> > > org-ref-bibtex.el:1092:27:Warning: reference to free variable
> > > `org-ref-pdf-directory'
> > > org-ref-bibtex.el:1098:27:Warning: reference to free
> variable
> > > `org-ref-notes-directory'
> > >
> > > In end of data:
> > > org-ref-bibtex.el:1324:1:Warning: the following functions are
> not known
> > > to be d\
> > > efined:
> > > reftex-get-bib-field, org-ref-find-bibliography
> > >
> > > Compiling file
> > >
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-citeproc.\
> > > el at Fri May 26 14:59:57 2017
> > >
> > > In end of data:
> > > org-ref-citeproc.el:919:1:Warning: the function
> > > `org-ref-get-bibtex-key-and-file' is not known to be
> defined.
> > >
> > > Compiling file
> > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-core.el
> a\
> > > t Fri May 26 14:59:57 2017
> > >
> > > In org-ref-update-pre-post-text:
> > > org-ref-core.el:3259:16:Warning: `delete-backward-char' is for
> > > interactive use
> > > only; use `delete-char' instead.
> > > org-ref-core.el:3260:12:Warning: `delete-backward-char' is
> for
> > > interactive use
> > > only; use `delete-char' instead.
> > >
> > > In end of data:
> > > org-ref-core.el:3498:1:Warning: the following functions are not
> known to
> > > be def\
> > > ined:
> > > org-ref-match-next-cite-link, org-ref-match-next-label-link,
> > > org-ref-match-next-ref-link,
> > > org-ref-make-org-link-cite-key-visible,
> > > org-in-commented-heading-p
> > >
> > > Compiling file
> > >
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm-bibt\
> > > ex.el at Fri May 26 14:59:58 2017
> > >
> > > In org-ref-format-citation:
> > > org-ref-helm-bibtex.el:308:22:Warning: assignment to free
> variable `end'
> > > org-ref-helm-bibtex.el:313:37:Warning: assignment to free
> variable
> > > `path'
> > > org-ref-helm-bibtex.el:313:37:Warning: reference to free
> variable `end'
> > > org-ref-helm-bibtex.el:311:16:Warning: looking-back called with
> 1
> > > argument,
> > > but requires 2-3
> > > org-ref-helm-bibtex.el:313:18:Warning: reference to free
> variable
> > > `path'
> > >
> > > In org-ref-helm-load-completions-async:
> > > org-ref-helm-bibtex.el:367:22:Warning: assignment to free
> variable
> > > `bibtex-completion-cached-candidates'
> > > org-ref-helm-bibtex.el:371:20:Warning: assignment to free
> variable
> > > `bibtex-completion-bibliography-hash'
> > >
> > > In org-ref-browser:
> > > org-ref-helm-bibtex.el:681:20:Warning: `show-all' is an obsolete
> > > function (as
> > > of 25.1); use `outline-show-all' instead.
> > > org-ref-helm-bibtex.el:712:61:Warning: assignment to free
> variable
> > > `count-key-pos'
> > > org-ref-helm-bibtex.el:715:68:Warning: reference to free
> > > variable
> > > `count-key-pos'
> > >
> > > Compiling file
> > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm.el
> a\
> > > t Fri May 26 14:59:58 2017
> > >
> > > In org-ref:
> > > org-ref-helm.el:289:78:Error: `add-to-list' can't use lexical
> var
> > > `matches';
> > > use `push' or `cl-pushnew'
> > > org-ref-helm.el:317:54:Error: `add-to-list' can't use
> lexical var
> > > `matches';
> > > use `push' or `cl-pushnew'
> > > org-ref-helm.el:306:39:Error: `add-to-list' can't use
> lexical
> > > var `matches';
> > > use `push' or `cl-pushnew'
> > > org-ref-helm.el:380:47:Warning: reference to free
> variable
> > > `org-latex-prefer-user-labels'
> > >
> > > Compiling file
> > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-pdf.el
> at\
> > > Fri May 26 14:59:59 2017
> > >
> > > In end of data:
> > > org-ref-pdf.el:248:1:Warning: the following functions are not
> known to
> > > be defin\
> > > ed:
> > > pdf-view-assert-active-region, pdf-view-active-region-text,
> > > pdf-view-deactivate-region
> > >
> > > Lars
> >
> >
> > --
> > Professor John Kitchin
> > Doherty Hall A207F
> > Department of Chemical Engineering
> > Carnegie Mellon University
> > Pittsburgh, PA 15213
> > 412-268-7803
> > @johnkitchin
> > [3]http://kitchingroup.cheme.cmu.edu
> >
>
> --
>
> John
> -----------------------------------
> Professor John Kitchin
> Doherty Hall A207F
> Department of Chemical Engineering
> Carnegie Mellon University
> Pittsburgh, PA 15213
> 412-268-7803
> @johnkitchin
> [4]http://kitchingroup.cheme.cmu.edu
>
> References
>
> 1. mailto:lars@lamasti.net
> 2. http://org-ref.org/
> 3. http://kitchingroup.cheme.cmu.edu/
> 4. http://kitchingroup.cheme.cmu.edu/
^ permalink raw reply [flat|nested] 7+ messages in thread
* Re: Error exporting org-ref.org to LaTeX (was: Re: Warnings while installing org-ref)
2017-05-28 8:09 ` Lars Bjørndal
@ 2017-06-02 19:45 ` John Kitchin
0 siblings, 0 replies; 7+ messages in thread
From: John Kitchin @ 2017-06-02 19:45 UTC (permalink / raw)
To: Lars Bjørndal; +Cc: emacs-orgmode@gnu.org
I updated the documentation on the build requirements.
Lars Bjørndal writes:
> Thank you. You wrote:
>
>> You might have to require org-id and a few other org-ref libs for wos,
>> Scopus and arxiv links. See the notes near the end of that document. I
>> am traveling sans emacs right now so I don't have the exact place to
>> look, but it is in a section on alternate builds I think.
>
> Yes, I got it.
>
> Please note that `org-id' is not mentioned in the org-ref.org file.
>
> The .tex file is now prduced without errors/warnings. The pdf is
> produced as well, but with warnings. Some of them are:
>
> Package glossaries Warning: No \printglossary or \printglossaries
> found.
> (Remove \makeglossaries if you don't want any glossaries.)
> This document will not have a glossary.
>
> LaTeX Warning: There were undefined references.
>
> Thanks and regards, Lars
>
>
>> On Sat, May 27, 2017 at 4:52 PM Lars Bjørndal <[1]lars@lamasti.net>
>> wrote:
>>
>> On Fri, May 26, 2017 at 04:06:52PM -0400, John Kitchin wrote:
>> > I pushed a bunch of commits today to clean up a lot of these.
>> There are
>> > still a few that I don't know how to get rid of, but it should be
>> a lot
>> > cleaner now.
>> Thanks a lot.
>> To learn Org, Org-ref and exports, I tried to export the
>> [2]org-ref.org
>> to LaTeX. The .tex file is produced, but I get the following error
>> message:
>> user-error: Unable to resolve link:
>> "id:212B487E-CC38-4BDF-9F0E-6993845AF49B"
>> What does that mean?
>> Thanks and regards, Lars
>> > Lars Bjørndal writes:
>> >
>> > > I installed org-ref from Elpa, and I got some warnings. Emacs
>> version:
>> > >
>> > > GNU Emacs 25.2.1 (x86_64-redhat-linux-gnu, GTK+ Version 3.20.10)
>> of 2017-05-02
>> > >
>> > > I'm not sure how critical these error messages are.
>> > >
>> > > Fri May 26 14:59:37 2017
>> > > Entering directory
>> `/home/tstl/.emacs.d/elpa/key-chord-20160227.438/'
>> > >
>> > > In key-chord-input-method:
>> > > key-chord.el:341:16:Warning: sit-for called with 3 arguments,
>> but
>> > > accepts only
>> > > 1-2
>> > > i May 26 14:59:45 2017
>> > > Entering directory
>> `/home/tstl/.emacs.d/elpa/helm-core-20170526.36/'
>> > >
>> > > In helm-position:
>> > > helm-lib.el:388:14:Warning: macro `helm-position' defined too
>> late
>> > >
>> > > In end of data:
>> > > helm-lib.el:1006:1:Warning: the following functions are not
>> known to be
>> > > defined\
>> > > :
>> > > helm-interpret-value, helm-get-current-source
>> > >
>> > > Compiling file
>> > >
>> /home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/bibtex-comple\
>> > > tion.el at Fri May 26 14:59:54 2017
>> > > Entering directory
>> `/home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/'
>> > >
>> > > In end of data:
>> > > bibtex-completion.el:1210:1:Warning: the following functions are
>> not
>> > > known to b\
>> > > e defined:
>> > > reftex-what-macro, org-find-property,
>> > > reftex-locate-bibliography-files
>> > >
>> > > Entering directory
>> `/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/'
>> > >
>> > > In end of data:
>> > > doi-utils.el:1361:1:Warning: the following functions are not
>> known to be
>> > > define\
>> > > d:
>> > > org-ref-find-bibliography, reftex-get-bib-field,
>> > > org-ref-bib-citation
>> > >
>> > > Compiling file
>> > >
>> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-bibtex.el\
>> > > at Fri May 26 14:59:57 2017
>> > >
>> > > In org-ref-bibtex-assoc-pdf-with-entry:
>> > > org-ref-bibtex.el:728:25:Warning: reference to free variable
>> > > `org-ref-pdf-directory'
>> > >
>> > > In orhc-bibtex-field-formatter:
>> > > org-ref-bibtex.el:1092:27:Warning: reference to free variable
>> > > `org-ref-pdf-directory'
>> > > org-ref-bibtex.el:1098:27:Warning: reference to free
>> variable
>> > > `org-ref-notes-directory'
>> > >
>> > > In end of data:
>> > > org-ref-bibtex.el:1324:1:Warning: the following functions are
>> not known
>> > > to be d\
>> > > efined:
>> > > reftex-get-bib-field, org-ref-find-bibliography
>> > >
>> > > Compiling file
>> > >
>> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-citeproc.\
>> > > el at Fri May 26 14:59:57 2017
>> > >
>> > > In end of data:
>> > > org-ref-citeproc.el:919:1:Warning: the function
>> > > `org-ref-get-bibtex-key-and-file' is not known to be
>> defined.
>> > >
>> > > Compiling file
>> > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-core.el
>> a\
>> > > t Fri May 26 14:59:57 2017
>> > >
>> > > In org-ref-update-pre-post-text:
>> > > org-ref-core.el:3259:16:Warning: `delete-backward-char' is for
>> > > interactive use
>> > > only; use `delete-char' instead.
>> > > org-ref-core.el:3260:12:Warning: `delete-backward-char' is
>> for
>> > > interactive use
>> > > only; use `delete-char' instead.
>> > >
>> > > In end of data:
>> > > org-ref-core.el:3498:1:Warning: the following functions are not
>> known to
>> > > be def\
>> > > ined:
>> > > org-ref-match-next-cite-link, org-ref-match-next-label-link,
>> > > org-ref-match-next-ref-link,
>> > > org-ref-make-org-link-cite-key-visible,
>> > > org-in-commented-heading-p
>> > >
>> > > Compiling file
>> > >
>> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm-bibt\
>> > > ex.el at Fri May 26 14:59:58 2017
>> > >
>> > > In org-ref-format-citation:
>> > > org-ref-helm-bibtex.el:308:22:Warning: assignment to free
>> variable `end'
>> > > org-ref-helm-bibtex.el:313:37:Warning: assignment to free
>> variable
>> > > `path'
>> > > org-ref-helm-bibtex.el:313:37:Warning: reference to free
>> variable `end'
>> > > org-ref-helm-bibtex.el:311:16:Warning: looking-back called with
>> 1
>> > > argument,
>> > > but requires 2-3
>> > > org-ref-helm-bibtex.el:313:18:Warning: reference to free
>> variable
>> > > `path'
>> > >
>> > > In org-ref-helm-load-completions-async:
>> > > org-ref-helm-bibtex.el:367:22:Warning: assignment to free
>> variable
>> > > `bibtex-completion-cached-candidates'
>> > > org-ref-helm-bibtex.el:371:20:Warning: assignment to free
>> variable
>> > > `bibtex-completion-bibliography-hash'
>> > >
>> > > In org-ref-browser:
>> > > org-ref-helm-bibtex.el:681:20:Warning: `show-all' is an obsolete
>> > > function (as
>> > > of 25.1); use `outline-show-all' instead.
>> > > org-ref-helm-bibtex.el:712:61:Warning: assignment to free
>> variable
>> > > `count-key-pos'
>> > > org-ref-helm-bibtex.el:715:68:Warning: reference to free
>> > > variable
>> > > `count-key-pos'
>> > >
>> > > Compiling file
>> > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm.el
>> a\
>> > > t Fri May 26 14:59:58 2017
>> > >
>> > > In org-ref:
>> > > org-ref-helm.el:289:78:Error: `add-to-list' can't use lexical
>> var
>> > > `matches';
>> > > use `push' or `cl-pushnew'
>> > > org-ref-helm.el:317:54:Error: `add-to-list' can't use
>> lexical var
>> > > `matches';
>> > > use `push' or `cl-pushnew'
>> > > org-ref-helm.el:306:39:Error: `add-to-list' can't use
>> lexical
>> > > var `matches';
>> > > use `push' or `cl-pushnew'
>> > > org-ref-helm.el:380:47:Warning: reference to free
>> variable
>> > > `org-latex-prefer-user-labels'
>> > >
>> > > Compiling file
>> > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-pdf.el
>> at\
>> > > Fri May 26 14:59:59 2017
>> > >
>> > > In end of data:
>> > > org-ref-pdf.el:248:1:Warning: the following functions are not
>> known to
>> > > be defin\
>> > > ed:
>> > > pdf-view-assert-active-region, pdf-view-active-region-text,
>> > > pdf-view-deactivate-region
>> > >
>> > > Lars
>> >
>> >
>> > --
>> > Professor John Kitchin
>> > Doherty Hall A207F
>> > Department of Chemical Engineering
>> > Carnegie Mellon University
>> > Pittsburgh, PA 15213
>> > 412-268-7803
>> > @johnkitchin
>> > [3]http://kitchingroup.cheme.cmu.edu
>> >
>>
>> --
>>
>> John
>> -----------------------------------
>> Professor John Kitchin
>> Doherty Hall A207F
>> Department of Chemical Engineering
>> Carnegie Mellon University
>> Pittsburgh, PA 15213
>> 412-268-7803
>> @johnkitchin
>> [4]http://kitchingroup.cheme.cmu.edu
>>
>> References
>>
>> 1. mailto:lars@lamasti.net
>> 2. http://org-ref.org/
>> 3. http://kitchingroup.cheme.cmu.edu/
>> 4. http://kitchingroup.cheme.cmu.edu/
--
Professor John Kitchin
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu
^ permalink raw reply [flat|nested] 7+ messages in thread
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Thread overview: 7+ messages (download: mbox.gz / follow: Atom feed)
-- links below jump to the message on this page --
2017-05-26 13:24 Warnings while installing org-ref Lars Bjørndal
2017-05-26 13:41 ` John Kitchin
2017-05-26 20:06 ` John Kitchin
2017-05-27 20:51 ` Error exporting org-ref.org to LaTeX (was: Re: Warnings while installing org-ref) Lars Bjørndal
2017-05-27 21:41 ` John Kitchin
2017-05-28 8:09 ` Lars Bjørndal
2017-06-02 19:45 ` John Kitchin
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