* Internal error: Message without type term
@ 2023-07-03 7:47 Peter P.
2023-07-03 10:34 ` David Bremner
0 siblings, 1 reply; 7+ messages in thread
From: Peter P. @ 2023-07-03 7:47 UTC (permalink / raw)
To: notmuch
Hi list,
I am not subscribed to this list, please add me as CC in your replies,
thanks!
I am getting
Internal error: Message without type term (lib/message.cc:402).
with notmuch 0.37-1+b1 on Debian stable. What can I do next?
Thanks!
Peter
^ permalink raw reply [flat|nested] 7+ messages in thread
* Re: Internal error: Message without type term
2023-07-03 7:47 Internal error: Message without type term Peter P.
@ 2023-07-03 10:34 ` David Bremner
2023-07-03 10:47 ` Peter P.
0 siblings, 1 reply; 7+ messages in thread
From: David Bremner @ 2023-07-03 10:34 UTC (permalink / raw)
To: Peter P., notmuch
"Peter P." <peterparker@fastmail.com> writes:
> Hi list,
> I am not subscribed to this list, please add me as CC in your replies,
> thanks!
>
> I am getting
> Internal error: Message without type term (lib/message.cc:402).
> with notmuch 0.37-1+b1 on Debian stable. What can I do next?
>
The first thing to try is to make a backup of your database with
notmuch dump > notmuch-db.txt
(or whatever you want to call the file).
If this succeeds then follow the steps below. If not, then _maybe_ there
is a way to recover your tags etc., but it will require recompiling some
parts of xapian, so write again.
1) install xapian-tools and run
$ xapian-check ~/.local/share/notmuch/default/xapian
This is mainly for (my) curiousity, but it may highlight some database
corruption or if xapian reports no errors that leans more towards a
notmuch bug.
2) Move the database out of the way, re-run notmuch new,
and restore your state using "notmuch restore < notmuch-db.txt"
^ permalink raw reply [flat|nested] 7+ messages in thread
* Re: Internal error: Message without type term
2023-07-03 10:34 ` David Bremner
@ 2023-07-03 10:47 ` Peter P.
2023-07-03 12:26 ` David Bremner
0 siblings, 1 reply; 7+ messages in thread
From: Peter P. @ 2023-07-03 10:47 UTC (permalink / raw)
To: David Bremner; +Cc: notmuch
Dear David,
* David Bremner <david@tethera.net> [2023-07-03 12:34]:
[...]
> The first thing to try is to make a backup of your database with
>
> notmuch dump > notmuch-db.txt
Thanks! notmuch dump throws the same error, prefixed with
+inbox +signed -- id:201805
though I am not sure if this id really belongs to the email causing it.
> (or whatever you want to call the file).
>
> If this succeeds then follow the steps below. If not, then _maybe_ there
> is a way to recover your tags etc., but it will require recompiling some
> parts of xapian, so write again.
> 1) install xapian-tools and run
>
> $ xapian-check ~/.local/share/notmuch/default/xapian
>
> This is mainly for (my) curiousity, but it may highlight some database
> corruption or if xapian reports no errors that leans more towards a
> notmuch bug.
I ran xapian-check on ~/.notmuch/xapian and include its messages below at the
end of this mail. Everyone please forgive me for pasting 1121 there. :)
> 2) Move the database out of the way, re-run notmuch new,
> and restore your state using "notmuch restore < notmuch-db.txt"
I'd be fine regenerating the entire database without a backup dump even,
I don't think there is anything in there that can't be regernerated, no?
How could I move the existing database out of the way? I have the
following files in notmuch's directory:
~/.notmuch/xapian$ ls -1
docdata.glass
flintlock
iamglass
position.glass
postlist.glass
termlist.glass
Thanks again David!
P
------>
docdata:
blocksize=8K items=161 firstunused=1 revision=1 levels=0 root=0
B-tree checked okay
docdata table structure checked OK
termlist:
blocksize=8K items=267730 firstunused=23171 revision=1 levels=2 root=746
B-tree checked okay
Size of wdf out of range in termlist
termlist_size != # of entries in termlist
doclen != sum(wdf)
termlist table errors found: 3
postlist:
blocksize=8K items=2437844 firstunused=22023 revision=1 levels=2 root=567
B-tree checked okay
document id 63805: length 325 doesn't match 0 in the termlist table
document id 89028: length 404416 doesn't match 359353 in the termlist table
collfreq 29 != sum wdf 25
termfreq 5 != # of entries 1
docid 3536 > last docid 3534
docid 3538 > last docid 3534
collfreq 15055 != sum wdf 15059
First did in this chunk is <= last in prev chunk
termfreq 8544 != # of entries 8555
collfreq 331831 != sum wdf 334753
termfreq 11793 != # of entries 11800
collfreq 24971 != sum wdf 24993
docid 10538 > last docid 10534
collfreq 217566 != sum wdf 217570
termfreq 5 != # of entries 1
collfreq 109 != sum wdf 113
docid 21012 > last docid 20915
docid 21019 > last docid 20915
docid 21117 > last docid 20915
docid 21229 > last docid 20915
docid 21340 > last docid 20915
docid 21342 > last docid 20915
docid 21392 > last docid 20915
docid 21394 > last docid 20915
docid 21408 > last docid 20915
docid 21499 > last docid 20915
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docid 5058200 > last docid 20915
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docid 5058206 > last docid 20915
docid 5058208 > last docid 20915
termfreq 1 != # of entries 458
collfreq 3 != sum wdf 3243515
lastdid 20915 != last did 5058208
docid 295877 > last docid 295873
lastdid 295873 != last did 295877
docid 323174 > last docid 323170
lastdid 323170 != last did 323174
docid 46977 > last docid 46869
docid 47381 > last docid 46869
termfreq 106 != # of entries 107
collfreq 639 != sum wdf 643
collfreq 128641 != sum wdf 128645
First did in this chunk is <= last in prev chunk
termfreq 26171 != # of entries 26209
collfreq 573463 != sum wdf 592306
termfreq 725 != # of entries 778
collfreq 14831 != sum wdf 15173
termfreq 363 != # of entries 364
collfreq 3695 != sum wdf 3697
termfreq 211 != # of entries 212
collfreq 2126 != sum wdf 2128
collfreq 3548 != sum wdf 3552
docid 20986 > last docid 20983
docid 20987 > last docid 20983
termfreq 2418 != # of entries 2698
collfreq 61919 != sum wdf 71256
collfreq 197618 != sum wdf 197622
docid 262032 > last docid 261935
docid 262044 > last docid 261935
docid 262154 > last docid 261935
docid 262257 > last docid 261935
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docid 315403 > last docid 261935
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docid 315600 > last docid 261935
docid 315710 > last docid 261935
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docid 315819 > last docid 261935
docid 315917 > last docid 261935
docid 316016 > last docid 261935
docid 316117 > last docid 261935
docid 316218 > last docid 261935
docid 316220 > last docid 261935
docid 578155 > last docid 261935
docid 578156 > last docid 261935
docid 578253 > last docid 261935
docid 578263 > last docid 261935
docid 578373 > last docid 261935
docid 578476 > last docid 261935
docid 578583 > last docid 261935
docid 578694 > last docid 261935
docid 578696 > last docid 261935
docid 599611 > last docid 261935
docid 599612 > last docid 261935
docid 599709 > last docid 261935
docid 599722 > last docid 261935
docid 599832 > last docid 261935
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docid 600031 > last docid 261935
docid 600082 > last docid 261935
docid 600200 > last docid 261935
docid 600304 > last docid 261935
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docid 600356 > last docid 261935
docid 600358 > last docid 261935
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docid 600677 > last docid 261935
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docid 863143 > last docid 261935
docid 863144 > last docid 261935
docid 863241 > last docid 261935
docid 863266 > last docid 261935
docid 863376 > last docid 261935
docid 863479 > last docid 261935
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docid 863811 > last docid 261935
docid 863923 > last docid 261935
docid 864045 > last docid 261935
docid 864155 > last docid 261935
docid 864256 > last docid 261935
docid 864373 > last docid 261935
docid 864481 > last docid 261935
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docid 864642 > last docid 261935
docid 864659 > last docid 261935
docid 864750 > last docid 261935
docid 864856 > last docid 261935
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docid 865028 > last docid 261935
docid 865127 > last docid 261935
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docid 865182 > last docid 261935
docid 865187 > last docid 261935
docid 865210 > last docid 261935
docid 865301 > last docid 261935
docid 865407 > last docid 261935
docid 865411 > last docid 261935
docid 886326 > last docid 261935
docid 1127347 > last docid 261935
docid 1158485 > last docid 261935
docid 1368367 > last docid 261935
docid 1368464 > last docid 261935
docid 1368470 > last docid 261935
docid 1368580 > last docid 261935
docid 1368682 > last docid 261935
docid 1368685 > last docid 261935
docid 1419245 > last docid 261935
docid 1430845 > last docid 261935
docid 1442444 > last docid 261935
docid 1442541 > last docid 261935
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docid 1442657 > last docid 261935
docid 1442759 > last docid 261935
docid 1442761 > last docid 261935
docid 1463857 > last docid 261935
docid 1463858 > last docid 261935
docid 1463955 > last docid 261935
docid 1463963 > last docid 261935
docid 1464073 > last docid 261935
docid 1464175 > last docid 261935
docid 1464227 > last docid 261935
docid 1464229 > last docid 261935
docid 1504157 > last docid 261935
docid 1504158 > last docid 261935
docid 1504255 > last docid 261935
docid 1504267 > last docid 261935
docid 1504377 > last docid 261935
docid 1504479 > last docid 261935
docid 1504600 > last docid 261935
docid 1504711 > last docid 261935
docid 1504827 > last docid 261935
docid 1504829 > last docid 261935
docid 1797122 > last docid 261935
docid 1797123 > last docid 261935
docid 1797221 > last docid 261935
docid 1797312 > last docid 261935
docid 1797418 > last docid 261935
docid 1797536 > last docid 261935
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docid 1798072 > last docid 261935
docid 2138807 > last docid 261935
docid 2139310 > last docid 261935
docid 2143125 > last docid 261935
docid 2145419 > last docid 261935
docid 2146180 > last docid 261935
docid 2146193 > last docid 261935
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docid 2148297 > last docid 261935
docid 2148339 > last docid 261935
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docid 2148474 > last docid 261935
docid 2149781 > last docid 261935
docid 2149802 > last docid 261935
docid 2149880 > last docid 261935
docid 2150028 > last docid 261935
docid 2150365 > last docid 261935
docid 2150394 > last docid 261935
docid 2150502 > last docid 261935
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docid 2151199 > last docid 261935
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docid 2151326 > last docid 261935
docid 2151395 > last docid 261935
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docid 2152125 > last docid 261935
docid 2152133 > last docid 261935
docid 2152624 > last docid 261935
docid 2152639 > last docid 261935
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docid 2154440 > last docid 261935
docid 2154450 > last docid 261935
docid 2154454 > last docid 261935
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docid 2154676 > last docid 261935
docid 2154677 > last docid 261935
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docid 2158188 > last docid 261935
docid 2158338 > last docid 261935
docid 2158941 > last docid 261935
docid 2159214 > last docid 261935
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docid 2164018 > last docid 261935
docid 2181898 > last docid 261935
docid 2181899 > last docid 261935
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docid 2182350 > last docid 261935
docid 2182429 > last docid 261935
docid 2182430 > last docid 261935
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docid 2183715 > last docid 261935
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docid 2184897 > last docid 261935
docid 2184958 > last docid 261935
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docid 2185013 > last docid 261935
docid 2185419 > last docid 261935
docid 2196906 > last docid 261935
docid 2212540 > last docid 261935
docid 2213624 > last docid 261935
docid 2214663 > last docid 261935
docid 2214831 > last docid 261935
docid 2260784 > last docid 261935
docid 2260785 > last docid 261935
docid 2274834 > last docid 261935
docid 2285389 > last docid 261935
docid 2304230 > last docid 261935
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docid 2354609 > last docid 261935
docid 2376698 > last docid 261935
docid 2384089 > last docid 261935
docid 2390234 > last docid 261935
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docid 2396095 > last docid 261935
docid 2396125 > last docid 261935
docid 2396156 > last docid 261935
docid 2396159 > last docid 261935
docid 2396548 > last docid 261935
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docid 2397803 > last docid 261935
docid 2397804 > last docid 261935
docid 2397808 > last docid 261935
docid 2397812 > last docid 261935
docid 2398671 > last docid 261935
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docid 2399220 > last docid 261935
docid 2399221 > last docid 261935
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docid 2399791 > last docid 261935
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docid 2400019 > last docid 261935
docid 2400024 > last docid 261935
docid 2400042 > last docid 261935
docid 2400255 > last docid 261935
docid 2400274 > last docid 261935
docid 2400278 > last docid 261935
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docid 2400395 > last docid 261935
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docid 2400778 > last docid 261935
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docid 2400840 > last docid 261935
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docid 2401422 > last docid 261935
docid 2401430 > last docid 261935
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docid 2401663 > last docid 261935
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docid 2402282 > last docid 261935
docid 2402286 > last docid 261935
docid 2402287 > last docid 261935
docid 2402292 > last docid 261935
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docid 2479541 > last docid 261935
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docid 2479754 > last docid 261935
docid 2479856 > last docid 261935
docid 2479858 > last docid 261935
docid 2532001 > last docid 261935
docid 2532002 > last docid 261935
docid 2532099 > last docid 261935
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docid 2532330 > last docid 261935
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docid 2532564 > last docid 261935
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docid 2532792 > last docid 261935
docid 2532910 > last docid 261935
docid 2533014 > last docid 261935
docid 2533125 > last docid 261935
docid 2533131 > last docid 261935
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docid 2533185 > last docid 261935
docid 2533187 > last docid 261935
docid 2533189 > last docid 261935
docid 2533214 > last docid 261935
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docid 2533411 > last docid 261935
docid 2533528 > last docid 261935
docid 2533634 > last docid 261935
docid 2533750 > last docid 261935
docid 2533848 > last docid 261935
docid 2533957 > last docid 261935
docid 2534068 > last docid 261935
docid 2534070 > last docid 261935
docid 2554465 > last docid 261935
docid 2554466 > last docid 261935
docid 2554563 > last docid 261935
docid 2554585 > last docid 261935
docid 2554695 > last docid 261935
docid 2554797 > last docid 261935
docid 2554920 > last docid 261935
docid 2555031 > last docid 261935
docid 2555150 > last docid 261935
docid 2555265 > last docid 261935
docid 2555371 > last docid 261935
docid 2555470 > last docid 261935
docid 2555585 > last docid 261935
docid 2555696 > last docid 261935
docid 2555699 > last docid 261935
docid 2660815 > last docid 261935
docid 2825214 > last docid 261935
docid 2989612 > last docid 261935
docid 2989709 > last docid 261935
docid 2989730 > last docid 261935
docid 2989840 > last docid 261935
docid 2989942 > last docid 261935
docid 2990065 > last docid 261935
docid 2990176 > last docid 261935
docid 2990291 > last docid 261935
docid 2990399 > last docid 261935
docid 2990516 > last docid 261935
docid 2990617 > last docid 261935
docid 2990629 > last docid 261935
docid 2990679 > last docid 261935
docid 2990686 > last docid 261935
docid 2990690 > last docid 261935
docid 2990693 > last docid 261935
docid 2990720 > last docid 261935
docid 2990811 > last docid 261935
docid 2990917 > last docid 261935
docid 2991034 > last docid 261935
docid 2991140 > last docid 261935
docid 2991256 > last docid 261935
docid 2991371 > last docid 261935
docid 2991483 > last docid 261935
docid 2991588 > last docid 261935
docid 2991699 > last docid 261935
docid 2991701 > last docid 261935
docid 3261338 > last docid 261935
termfreq 1 != # of entries 423
collfreq 1 != sum wdf 5430479
lastdid 261935 != last did 3261338
collfreq 24746 != sum wdf 24750
collfreq 65388 != sum wdf 65392
termfreq 66671 != # of entries 66685
collfreq 1936000 != sum wdf 1937849
termfreq 486 != # of entries 592
collfreq 8681 != sum wdf 27243
Failed to unpack wdf
No last chunk for term 'Zre\x04\fo'
collfreq 179379 != sum wdf 179383
termfreq 392 != # of entries 395
collfreq 21293 != sum wdf 21301
collfreq 55 != sum wdf 59
collfreq 261223 != sum wdf 261227
collfreq 1 != sum wdf 5
collfreq 1071706 != sum wdf 1071710
docid 2080 > last docid 2076
collfreq 51416 != sum wdf 51420
termfreq 2055 != # of entries 2061
collfreq 53739 != sum wdf 53759
collfreq 1080 != sum wdf 1084
collfreq 2 != sum wdf 6
termfreq 6860 != # of entries 6876
collfreq 51054 != sum wdf 51657
termfreq 1093 != # of entries 1116
collfreq 35366 != sum wdf 35408
collfreq 9504 != sum wdf 9508
collfreq 19438 != sum wdf 19442
collfreq 70 != sum wdf 74
collfreq 10148080 != sum wdf 10148084
collfreq 250 != sum wdf 254
collfreq 898103 != sum wdf 898107
termfreq 299 != # of entries 300
collfreq 4276 != sum wdf 4279
collfreq 70165 != sum wdf 70169
termfreq 5 != # of entries 423
collfreq 11 != sum wdf 3529494
collfreq 90939 != sum wdf 90943
postlist table errors found: 962
position:
blocksize=8K items=19047625 firstunused=46353 revision=1 levels=2 root=520
B-tree checked okay
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
position table: Junk after position data
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
position table: Junk after position data
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
Position list entry for document 63805 which doesn't exist or has no terms
position table errors found: 129
spelling:
Lazily created, and not yet used.
synonym:
Lazily created, and not yet used.
Total errors found: 1094
^ permalink raw reply [flat|nested] 7+ messages in thread
* Re: Internal error: Message without type term
2023-07-03 10:47 ` Peter P.
@ 2023-07-03 12:26 ` David Bremner
2023-07-03 12:48 ` Peter P.
2023-07-04 0:20 ` Olly Betts
0 siblings, 2 replies; 7+ messages in thread
From: David Bremner @ 2023-07-03 12:26 UTC (permalink / raw)
To: Peter P.; +Cc: notmuch, xapian-discuss
"Peter P." <peterparker@fastmail.com> writes:
> I ran xapian-check on ~/.notmuch/xapian and include its messages below at the
> end of this mail. Everyone please forgive me for pasting 1121 there. :)
>
H'mm. It doesn't look familiar to me, but I will check with xapian
experts to see if the failure mode is known/fixable. I'd guess probably
not fixable.
>> 2) Move the database out of the way, re-run notmuch new,
>> and restore your state using "notmuch restore < notmuch-db.txt"
>
> I'd be fine regenerating the entire database without a backup dump even,
> I don't think there is anything in there that can't be regernerated,
> no?
The main thing that would be lost is tags that are not synched to
maildir flags. In the "standard" workflow "inbox" is such a tag.
> How could I move the existing database out of the way? I have the
> following files in notmuch's directory:
>
> ~/.notmuch/xapian$ ls -1
> docdata.glass
> flintlock
> iamglass
> position.glass
> postlist.glass
> termlist.glass
just
$ mv ~/.notmuch/xapian ~/.notmuch/xapian.bak
(assuming that partition has space)
^ permalink raw reply [flat|nested] 7+ messages in thread
* Re: Internal error: Message without type term
2023-07-03 12:26 ` David Bremner
@ 2023-07-03 12:48 ` Peter P.
2023-07-04 0:20 ` Olly Betts
1 sibling, 0 replies; 7+ messages in thread
From: Peter P. @ 2023-07-03 12:48 UTC (permalink / raw)
To: David Bremner; +Cc: notmuch
(to notmuch-list only)
* David Bremner <david@tethera.net> [2023-07-03 14:26]:
[...]
> >> 2) Move the database out of the way, re-run notmuch new,
> >> and restore your state using "notmuch restore < notmuch-db.txt"
> >
> > I'd be fine regenerating the entire database without a backup dump even,
> > I don't think there is anything in there that can't be regernerated,
> > no?
>
> The main thing that would be lost is tags that are not synched to
> maildir flags. In the "standard" workflow "inbox" is such a tag.
I gladly re-created the database and the error is gone. Do you want me
to keep to old database in case someone wants to research this issue further?
Much appreciated,
Peter
^ permalink raw reply [flat|nested] 7+ messages in thread
* Re: Internal error: Message without type term
2023-07-03 12:26 ` David Bremner
2023-07-03 12:48 ` Peter P.
@ 2023-07-04 0:20 ` Olly Betts
2023-07-04 20:37 ` Peter P.
1 sibling, 1 reply; 7+ messages in thread
From: Olly Betts @ 2023-07-04 0:20 UTC (permalink / raw)
To: David Bremner; +Cc: Peter P., notmuch, xapian-discuss
On Mon, Jul 03, 2023 at 02:26:03PM +0200, David Bremner wrote:
> "Peter P." <peterparker@fastmail.com> writes:
>
> > I ran xapian-check on ~/.notmuch/xapian and include its messages
> > below at the end of this mail. Everyone please forgive me for
> > pasting 1121 there. :)
>
> H'mm. It doesn't look familiar to me, but I will check with xapian
> experts to see if the failure mode is known/fixable. I'd guess probably
> not fixable.
Currently we don't have a database fixing tool for glass databases (the
"fix" mode in xapian-check can recreate base files for the older chert
database format, but glass doesn't have these base files which
eradicated the failure mode of them sometimes getting truncated to zero
size on power failure or OS crash).
Some of the problems reported have an obvious fix, but we don't have
existing code to fix them, and some look like they are probably due to
data being overwritten so fixing everything to be consistent probably
wouldn't actually give a database that entirely matches your email
anyway.
Was this database originally created by Xapian < 1.4.22? It looks
like it could be the result of the bug fixed in 1.4.22 with handling
commit() failure on disk full.
> >> 2) Move the database out of the way, re-run notmuch new,
> >> and restore your state using "notmuch restore < notmuch-db.txt"
> >
> > I'd be fine regenerating the entire database without a backup dump even,
> > I don't think there is anything in there that can't be regernerated,
> > no?
>
> The main thing that would be lost is tags that are not synched to
> maildir flags. In the "standard" workflow "inbox" is such a tag.
If there's tag data in the database which isn't backed up or synced to
maildir flags, you may be able to rescue it using:
https://git.xapian.org/?p=xapian;a=blob;f=README.notmuch;hb=refs/heads/notmuch-tag-rescue-hack
This creates a file with the tag data in the format `notmuch restore`
expects. I'd expect this would work for your database as the termlist
table is mostly OK.
Cheers,
Olly
^ permalink raw reply [flat|nested] 7+ messages in thread* Re: Internal error: Message without type term
2023-07-04 0:20 ` Olly Betts
@ 2023-07-04 20:37 ` Peter P.
0 siblings, 0 replies; 7+ messages in thread
From: Peter P. @ 2023-07-04 20:37 UTC (permalink / raw)
To: David Bremner, notmuch, xapian-discuss
Olly, David, list(s),
* Olly Betts <olly@survex.com> [2023-07-04 02:20]:
[...]
> Was this database originally created by Xapian < 1.4.22? It looks
> like it could be the result of the bug fixed in 1.4.22 with handling
> commit() failure on disk full.
Indeed I have Debian's libxapian30 package installed which reports
version 1.4.22-1 and I *might* have ran out of disk space in the not too
distant past.
> > >> 2) Move the database out of the way, re-run notmuch new,
> > >> and restore your state using "notmuch restore < notmuch-db.txt"
> > >
> > > I'd be fine regenerating the entire database without a backup dump even,
> > > I don't think there is anything in there that can't be regernerated,
> > > no?
> >
> > The main thing that would be lost is tags that are not synched to
> > maildir flags. In the "standard" workflow "inbox" is such a tag.
>
> If there's tag data in the database which isn't backed up or synced to
> maildir flags, you may be able to rescue it using:
>
> https://git.xapian.org/?p=xapian;a=blob;f=README.notmuch;hb=refs/heads/notmuch-tag-rescue-hack
>
> This creates a file with the tag data in the format `notmuch restore`
> expects. I'd expect this would work for your database as the termlist
> table is mostly OK.
Thank you, I did meanwhile recreate the database from scratch and it
seems to work™.
best, Peter\r
^ permalink raw reply [flat|nested] 7+ messages in thread
end of thread, other threads:[~2023-07-04 20:46 UTC | newest]
Thread overview: 7+ messages (download: mbox.gz / follow: Atom feed)
-- links below jump to the message on this page --
2023-07-03 7:47 Internal error: Message without type term Peter P.
2023-07-03 10:34 ` David Bremner
2023-07-03 10:47 ` Peter P.
2023-07-03 12:26 ` David Bremner
2023-07-03 12:48 ` Peter P.
2023-07-04 0:20 ` Olly Betts
2023-07-04 20:37 ` Peter P.
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