* database error
@ 2016-08-14 17:14 Ken
2016-08-14 23:27 ` David Bremner
0 siblings, 1 reply; 6+ messages in thread
From: Ken @ 2016-08-14 17:14 UTC (permalink / raw)
To: Notmuch Mail
I'm getting the following error:
ken@ken-Presario-CQ57-Notebook-PC:~$ notmuch new
Error: Notmuch database at /home/ken/Mail/.notmuch
has a newer database format version (3) than supported by this
version of notmuch (1). Refusing to open this database in
read-write mode.
Can anyone help me fix this?
Ken
^ permalink raw reply [flat|nested] 6+ messages in thread
* Re: database error
2016-08-14 17:14 database error Ken
@ 2016-08-14 23:27 ` David Bremner
2016-08-15 7:37 ` Tomi Ollila
0 siblings, 1 reply; 6+ messages in thread
From: David Bremner @ 2016-08-14 23:27 UTC (permalink / raw)
To: Ken, Notmuch Mail
Ken <kensubuntu@gmail.com> writes:
> I'm getting the following error:
>
>
> ken@ken-Presario-CQ57-Notebook-PC:~$ notmuch new
> Error: Notmuch database at /home/ken/Mail/.notmuch
> has a newer database format version (3) than supported by this
> version of notmuch (1). Refusing to open this database in
> read-write mode.
>
> Can anyone help me fix this?
Did you downgrade notmuch (i.e. is the message correct)? If so, can you
undo that downgrade long enough to dump your database?
d
^ permalink raw reply [flat|nested] 6+ messages in thread
* Re: database error
2016-08-14 23:27 ` David Bremner
@ 2016-08-15 7:37 ` Tomi Ollila
0 siblings, 0 replies; 6+ messages in thread
From: Tomi Ollila @ 2016-08-15 7:37 UTC (permalink / raw)
To: David Bremner, Ken, Notmuch Mail
On Mon, Aug 15 2016, David Bremner <david@tethera.net> wrote:
> Ken <kensubuntu@gmail.com> writes:
>
>> I'm getting the following error:
>>
>>
>> ken@ken-Presario-CQ57-Notebook-PC:~$ notmuch new
>> Error: Notmuch database at /home/ken/Mail/.notmuch
>> has a newer database format version (3) than supported by this
>> version of notmuch (1). Refusing to open this database in
>> read-write mode.
>>
>> Can anyone help me fix this?
>
> Did you downgrade notmuch (i.e. is the message correct)? If so, can you
> undo that downgrade long enough to dump your database?
what does notmuch --version say...
note to us: we could add notmuch version information print to that error message
>
> d
^ permalink raw reply [flat|nested] 6+ messages in thread
* Database error
@ 2018-04-19 18:26 Varac
2018-04-20 12:44 ` David Bremner
0 siblings, 1 reply; 6+ messages in thread
From: Varac @ 2018-04-19 18:26 UTC (permalink / raw)
To: Notmuch Mail
[-- Attachment #1: Type: text/plain, Size: 4941 bytes --]
Hi,
I get a DatabaseError right after initial indexing.
I can reproduce this with my mails every time.
First, I remove the whole .notmuch/xapian directory and
run "notmuch new", which results in a DatabaseError when
using "xapian-check":
» notmuch new
Welcome to a new version of notmuch! Your database will now be upgraded.
This process is safe to interrupt.
Backing up tags to /home/varac/.offlineimap/Mail/.notmuch/dump-20180419T160138.gz...
Your notmuch database has now been upgraded.
Processed 148440 total files in 13m 38s (181 files/sec.).
Added 140351 new messages to the database.
» xapian-check .notmuch/xapian
docdata:
blocksize=8K items=564 firstunused=7 revision=7 levels=1 root=2
B-tree checked okay
docdata table structure checked OK
termlist:
blocksize=8K items=305882 firstunused=64506 revision=7 levels=2 root=63491
xapian-check: DatabaseError: 1 unused block(s) missing from the free list, first is 0
» notmuch compact
Compacting database...
compacting table postlist
Reduced by 34% 130352K (373696K -> 243344K)
compacting table docdata
Reduced by 28% 16K (56K -> 40K)
compacting table termlist
Reduced by 48% 250928K (516048K -> 265120K)
compacting table position
Reduced by 44% 455456K (1034784K -> 579328K)
compacting table spelling
doesn't exist
compacting table synonym
doesn't exist
Done.
» xapian-check .notmuch/xapian
docdata:
blocksize=8K items=564 firstunused=5 revision=1 levels=1 root=2
B-tree checked okay
docdata table structure checked OK
termlist:
blocksize=8K items=305882 firstunused=33140 revision=1 levels=2 root=746
B-tree checked okay
termlist table structure checked OK
postlist:
blocksize=8K items=2845658 firstunused=30418 revision=1 levels=2 root=578
B-tree checked okay
postlist table structure checked OK
position:
blocksize=8K items=27789188 firstunused=72416 revision=1 levels=2 root=466
B-tree checked okay
position table structure checked OK
spelling:
Lazily created, and not yet used.
synonym:
Lazily created, and not yet used.
No errors found
» dpkg -l |egrep '(notmuch|xapian)'
ii afew 1.3.0-1 all Tagging script for notmuch mail
ii libnotmuch-dev 0.26-1ubuntu3 amd64 thread-based email index, search and tagging (development)
ii libnotmuch5 0.26-1ubuntu3 amd64 thread-based email index, search and tagging (runtime)
ii libxapian30:amd64 1.4.5-1 amd64 Search engine library
ii notmuch 0.26-1ubuntu3 amd64 thread-based email index, search and tagging
ii notmuch-addrlookup 9-1 amd64 Address lookup tool for Notmuch
ii python-notmuch 0.26-1ubuntu2 all Python interface to the notmuch mail search and index library
ii python3-notmuch 0.26-1ubuntu3 all Python 3 interface to the notmuch mail search and index library
ii xapian-tools 1.4.5-1 amd64 Basic tools for Xapian search engine library
After this I try to tun "afew --tag --new -v" but it fails with (I don't know if
this is related though):
Traceback (most recent call last):
File "/usr/bin/afew", line 11, in <module>
load_entry_point('afew==1.3.0', 'console_scripts', 'afew')()
File "/usr/lib/python3/dist-packages/afew/commands.py", line 159, in main
inner_main(args, database, query_string)
File "/usr/lib/python3/dist-packages/afew/main.py", line 23, in main
filter_.run(query_string)
File "/usr/lib/python3/dist-packages/afew/filters/BaseFilter.py", line 59, in run
for message in self.database.get_messages(query):
File "/usr/lib/python3/dist-packages/afew/Database.py", line 93, in get_messages
for message in self.do_query(query).search_messages():
File "/usr/lib/python3/dist-packages/notmuch/query.py", line 182, in search_messages
raise NotmuchError(status)
notmuch.errors.XapianError
Please help! I kind of lost here.
Greetings, Varac
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^ permalink raw reply [flat|nested] 6+ messages in thread
* Re: Database error
2018-04-19 18:26 Database error Varac
@ 2018-04-20 12:44 ` David Bremner
2018-04-20 12:57 ` Varac
0 siblings, 1 reply; 6+ messages in thread
From: David Bremner @ 2018-04-20 12:44 UTC (permalink / raw)
To: Varac, Notmuch Mail
Varac <varac@leap.se> writes:
> Hi,
>
> I get a DatabaseError right after initial indexing.
> I can reproduce this with my mails every time.
> First, I remove the whole .notmuch/xapian directory and
> run "notmuch new", which results in a DatabaseError when
> using "xapian-check":
>
>
> » notmuch new
> Welcome to a new version of notmuch! Your database will now be upgraded.
> This process is safe to interrupt.
> Backing up tags to /home/varac/.offlineimap/Mail/.notmuch/dump-20180419T160138.gz...
> Your notmuch database has now been upgraded.
> Processed 148440 total files in 13m 38s (181 files/sec.).
> Added 140351 new messages to the database.
>
> » xapian-check .notmuch/xapian
> docdata:
> blocksize=8K items=564 firstunused=7 revision=7 levels=1 root=2
> B-tree checked okay
> docdata table structure checked OK
>
> termlist:
> blocksize=8K items=305882 firstunused=64506 revision=7 levels=2 root=63491
> xapian-check: DatabaseError: 1 unused block(s) missing from the free list, first is 0
This is almost certainly a known and recently fixed xapian bug. notmuch
compact is the recommended workaround (or just ignore the message).
>
> After this I try to tun "afew --tag --new -v" but it fails with (I don't know if
> this is related though):
>
> Traceback (most recent call last):
> File "/usr/bin/afew", line 11, in <module>
> load_entry_point('afew==1.3.0', 'console_scripts', 'afew')()
> File "/usr/lib/python3/dist-packages/afew/commands.py", line 159, in main
> inner_main(args, database, query_string)
> File "/usr/lib/python3/dist-packages/afew/main.py", line 23, in main
> filter_.run(query_string)
> File "/usr/lib/python3/dist-packages/afew/filters/BaseFilter.py", line 59, in run
> for message in self.database.get_messages(query):
> File "/usr/lib/python3/dist-packages/afew/Database.py", line 93, in get_messages
> for message in self.do_query(query).search_messages():
> File "/usr/lib/python3/dist-packages/notmuch/query.py", line 182, in search_messages
> raise NotmuchError(status)
> notmuch.errors.XapianError
>
It's hard to say for sure, but it's possible this would be fixed by the
patch
https://mid.mail-archive.com/20180414014610.15438-4-david@tethera.net
That should be part of a bug-fix release of notmuch fairly soon. You can
also try to find a subset of mail reproducing the problem. I don't
know what that afew invokation is trying to do. Can you reproduce the
problem using the notmuch CLI?
d
^ permalink raw reply [flat|nested] 6+ messages in thread
* Re: Database error
2018-04-20 12:44 ` David Bremner
@ 2018-04-20 12:57 ` Varac
0 siblings, 0 replies; 6+ messages in thread
From: Varac @ 2018-04-20 12:57 UTC (permalink / raw)
To: Notmuch Mail
[-- Attachment #1: Type: text/plain, Size: 2187 bytes --]
Quoting David Bremner (2018-04-20 14:44:25)
> > » xapian-check .notmuch/xapian docdata:
> > blocksize=8K items=564 firstunused=7 revision=7 levels=1 root=2
> > B-tree checked okay
> > docdata table structure checked OK
> >
> > termlist:
> > blocksize=8K items=305882 firstunused=64506 revision=7 levels=2 root=63491
> > xapian-check: DatabaseError: 1 unused block(s) missing from the free list, first is 0
>
>
> This is almost certainly a known and recently fixed xapian bug. notmuch
> compact is the recommended workaround (or just ignore the message).
Ok, I'll ignore it for now.
>
> >
> > After this I try to tun "afew --tag --new -v" but it fails with (I don't know if
> > this is related though):
> >
> > Traceback (most recent call last):
> > File "/usr/bin/afew", line 11, in <module>
> > load_entry_point('afew==1.3.0', 'console_scripts', 'afew')()
> > File "/usr/lib/python3/dist-packages/afew/commands.py", line 159, in main
> > inner_main(args, database, query_string)
> > File "/usr/lib/python3/dist-packages/afew/main.py", line 23, in main
> > filter_.run(query_string)
> > File "/usr/lib/python3/dist-packages/afew/filters/BaseFilter.py", line 59, in run
> > for message in self.database.get_messages(query):
> > File "/usr/lib/python3/dist-packages/afew/Database.py", line 93, in get_messages
> > for message in self.do_query(query).search_messages():
> > File "/usr/lib/python3/dist-packages/notmuch/query.py", line 182, in search_messages
> > raise NotmuchError(status)
> > notmuch.errors.XapianError
> >
>
> It's hard to say for sure, but it's possible this would be fixed by the
> patch
>
> https://mid.mail-archive.com/20180414014610.15438-4-david@tethera.net
>
> That should be part of a bug-fix release of notmuch fairly soon. You can
> also try to find a subset of mail reproducing the problem. I don't
> know what that afew invokation is trying to do. Can you reproduce the
> problem using the notmuch CLI?
It turned out that this was a bad syntax in afew, where I quoted a query in
single quotes.
Greetings, Varac
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^ permalink raw reply [flat|nested] 6+ messages in thread
end of thread, other threads:[~2018-04-20 12:57 UTC | newest]
Thread overview: 6+ messages (download: mbox.gz / follow: Atom feed)
-- links below jump to the message on this page --
2018-04-19 18:26 Database error Varac
2018-04-20 12:44 ` David Bremner
2018-04-20 12:57 ` Varac
-- strict thread matches above, loose matches on Subject: below --
2016-08-14 17:14 database error Ken
2016-08-14 23:27 ` David Bremner
2016-08-15 7:37 ` Tomi Ollila
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