From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <70535@debbugs.gnu.org>
Cc: Ricardo Wurmus <rekado@elephly.net>
Subject: [bug#70535] [PATCH 5/5] gnu: Add r-metadeconfoundr.
Date: Tue, 23 Apr 2024 13:25:46 +0200 [thread overview]
Message-ID: <bda80f881fb9f31f0c0a694237c7876c6d36dea9.1713871546.git.madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <169f518d77f20df0bfa5f59d5e4a6d4cd7d2282b.1713871546.git.madalinionel.patrascu@mdc-berlin.de>
* gnu/packages/cran.scm (r-metadeconfoundr): New variable.
Change-Id: I733fb464d2a3c7fd1335826be9f23e2610e6fd60
---
gnu/packages/cran.scm | 41 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 41 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 57dabc8ec3..46749aa714 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -41612,6 +41612,47 @@ (define-public r-metadat
analyses.")
(license license:gpl2+)))
+(define-public r-metadeconfoundr
+ ;; There are some consistent updates after the release of version 0.3.0.
+ (let ((commit "90aec0226c5128bfcbbc08903452eff460d21424")
+ (revision "1"))
+ (package
+ (name "r-metadeconfoundr")
+ (version (git-version "0.3.0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/TillBirkner/metadeconfoundR")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0zkqar27p5qwq46xbxsw5x1pl50xbkgqiizw5bydlyhwb0ga2f3h"))))
+ (properties `((upstream-name . "metadeconfoundR")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-bigmemory
+ r-detectseparation
+ r-doparallel
+ r-dosnow
+ r-foreach
+ r-futile-logger
+ r-ggplot2
+ r-lme4
+ r-lmtest
+ r-reshape2
+ r-snow))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/TillBirkner/metadeconfoundR")
+ (synopsis "Check multiple covariates for potenial confounding effects")
+ (description
+ "This package detects naive associations between omics features and
+metadata in cross-sectional data-sets using non-parametric tests. In a second
+step, confounding effects between metadata associated to the same omics feature
+are detected and labeled using nested post-hoc model comparison tests. The
+generated output can be graphically summarized using the built-in plotting
+function.")
+ (license license:gpl2))))
+
(define-public r-mathjaxr
(package
(name "r-mathjaxr")
--
2.41.0
next prev parent reply other threads:[~2024-04-23 11:28 UTC|newest]
Thread overview: 7+ messages / expand[flat|nested] mbox.gz Atom feed top
2024-04-23 11:20 [bug#70535] [Patch] gnu: Add r-lpsolveapi, r-roi, r-roi-plugin-lpsolve, r-detectseparation and r-metadeconfoundr MadalinIonel.Patrascu
2024-04-23 11:25 ` [bug#70535] [PATCH 1/5] gnu: Add r-lpsolveapi Mădălin Ionel Patrașcu
2024-04-23 11:25 ` [bug#70535] [PATCH 2/5] gnu: Add r-roi Mădălin Ionel Patrașcu
2024-04-23 11:25 ` [bug#70535] [PATCH 3/5] gnu: Add r-roi-plugin-lpsolve Mădălin Ionel Patrașcu
2024-04-23 11:25 ` [bug#70535] [PATCH 4/5] gnu: Add r-detectseparation Mădălin Ionel Patrașcu
2024-04-23 11:25 ` Mădălin Ionel Patrașcu [this message]
2024-05-06 9:37 ` bug#70535: [PATCH 1/5] gnu: Add r-lpsolveapi Ricardo Wurmus
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