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| | ;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu packages statistics)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix utils)
#:use-module (guix build-system gnu)
#:use-module (gnu packages)
#:use-module (gnu packages compression)
#:use-module (gnu packages gcc)
#:use-module (gnu packages gtk)
#:use-module (gnu packages icu4c)
#:use-module (gnu packages image)
#:use-module (gnu packages java)
#:use-module (gnu packages maths)
#:use-module (gnu packages pcre)
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages readline)
#:use-module (gnu packages texlive)
#:use-module (gnu packages texinfo)
#:use-module (gnu packages which)
#:use-module (gnu packages xorg))
(define-public r
(package
(name "r")
(version "3.1.2")
(source (origin
(method url-fetch)
(uri (string-append "mirror://cran/src/base/R-"
(version-prefix version 1) "/R-"
version ".tar.gz"))
(sha256
(base32
"0ypsm11c7n49pgh2ricyhhpfhas3famscdazzdp2zq70rapm1ldw"))))
(build-system gnu-build-system)
(arguments
`(;; Tests fail probably because of locale issues:
;; > tm <- seq(as.POSIXct("2012-06-01 06:00"), by = "6 hours", length.out = 24)
;; Error in as.POSIXlt.character(x, tz, ...) :
;; character string is not in a standard unambiguous format
#:tests? #f
#:phases
;; XXX This phase doesn't fix the tests.
(alist-cons-before
'check 'install-locales
(lambda _
;; A bunch of tests require the availability of a UTF-8
;; locale and otherwise fail. Give them what they want.
(setenv "LOCPATH" (getcwd))
(setenv "LANG" "en_US.UTF-8")
(zero? (system* "localedef" "--no-archive"
"--prefix" (getcwd) "-i" "en_US"
"-f" "UTF-8" "./en_US.UTF-8")))
%standard-phases)
#:configure-flags
'("--with-blas"
"--with-lapack"
"--with-cairo"
"--with-libpng"
"--with-jpeglib"
"--with-libtiff"
"--with-ICU"
"--enable-R-shlib"
"--enable-BLAS-shlib"
"--with-system-zlib"
"--with-system-bzlib"
"--with-system-pcre"
"--with-system-tre"
"--with-system-xz")))
(native-inputs
`(("pkg-config" ,pkg-config)))
(inputs
`(("atlas" ,atlas) ; --with-blas
("bzip2" ,bzip2)
("cairo" ,cairo)
("gfortran" ,gfortran-4.8)
("icu4c" ,icu4c)
("icedtea6" ,icedtea6)
("lapack" ,lapack)
("libjpeg" ,libjpeg)
("libpng" ,libpng)
("libtiff" ,libtiff)
("libxt" ,libxt)
("pcre" ,pcre)
("perl" ,perl)
("readline" ,readline)
("texlive" ,texlive) ; needed to make vignettes
("texinfo" ,texinfo) ; for building HTML manuals
("which" ,which) ; for tests/Examples/base-Ex.R
("xz" ,xz)
("zlib" ,zlib)))
(home-page "http://www.r-project.org/")
(synopsis "Language and environment for statistical computing and graphics")
(description
"R is a language and environment for statistical computing and graphics.
R is similar to the award-winning S system, which was developed at Bell
Laboratories by John Chambers et al. It provides a wide variety of
statistical and graphical techniques (linear and nonlinear modelling,
statistical tests, time series analysis, classification, clustering, ...).
R is designed as a true computer language with control-flow constructions for
iteration and alternation, and it allows users to add additional functionality
by defining new functions. For computationally intensive tasks, C, C++ and
Fortran code can be linked and called at run time.")
(license license:gpl3+)))
|