From: Laura Lazzati <laura.lazzati.15@gmail.com>
To: "Björn Höfling" <bjoern.hoefling@bjoernhoefling.de>,
"Gábor Boskovits" <boskovits@gmail.com>,
"Ludovic Courtès" <ludo@gnu.org>,
rekado@elephly.net
Cc: Guix-devel <guix-devel@gnu.org>,
Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Subject: Re: [outreach] Help trying to create R package
Date: Fri, 2 Nov 2018 16:44:38 -0300 [thread overview]
Message-ID: <CAPNLzUM-_1bPpbivkY6-cL+7+=2YvngJ1Ej1MmNiHOmz4CkcEw@mail.gmail.com> (raw)
In-Reply-To: <20181016082350.75757e6b@alma-ubu>
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>
>
> I tracked it down:
>
> The cause is that:
>
> guix/import/cran.scm:
>
> (define (latest-bioconductor-package-version name)
> "Return the version string corresponding to the latest release of the
> bioconductor package NAME, or #F if the package is unknown."
>
> actually returns #f. It's a bit said that this #f is not checked
> further down. The problem is the package name. If you add an "r" before
> the package name, it should work (suppose you fixed the first problem):
>
> guix import cran --archive=bioconductor rtracklayer
>
Sorry for writing again on this topic.
Today I wanted to practice packaging an r package belonging to
bioconductor, to then go on and read and work with texinfo.
After writing on IRC channel, I realized I already had this exact problem,
but thought it was a problem of other packages.
I ran again this same command, and I am getting:
$guix import cran -a bioconductor rtracklayer
guile: warning: failed to install locale
hint: Consider installing the `glibc-utf8-locales' or `glibc-locales'
package and defining `GUIX_LOCPATH', along these lines:
guix package -i glibc-utf8-locales
export GUIX_LOCPATH="$HOME/.guix-profile/lib/locale"
See the "Application Setup" section in the manual, for more info.
Starting download of /tmp/guix-file.kBVFop
From
https://bioconductor.org/packages/release/bioc/src/contrib/rtracklayer_1.40.6.tar.gz.
..
download failed "
https://bioconductor.org/packages/release/bioc/src/contrib/rtracklayer_1.40.6.tar.gz"
404 "Not Found"
failed to download "/tmp/guix-file.kBVFop" from "
https://bioconductor.org/packages/release/bioc/src/contrib/rtracklayer_1.40.6.tar.gz
"
Backtrace
(and the backtrace is the same).
I am also new to schemas, but opened guix/import/cran.scm and saw what
Bjorn was saying. I don't know why if it is not the latest package there
should be a false condition, but I don't know either why I am not getting
the latest version from bioconductor if it is real that, for tracklayer the
latest is 42 and that file does not exist.
Any ideas? Should I spend more time trying to figure this out or should I
move on to another task, like knowing guix more deeply or learning texinfo?
Regards!
Laura
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next prev parent reply other threads:[~2018-11-02 19:45 UTC|newest]
Thread overview: 46+ messages / expand[flat|nested] mbox.gz Atom feed top
2018-10-13 13:36 [outreach] Help trying to create R package Laura Lazzati
2018-10-13 17:58 ` Gábor Boskovits
2018-10-13 18:25 ` Catonano
2018-10-14 0:40 ` Laura Lazzati
2018-10-15 22:47 ` Laura Lazzati
2018-10-16 5:44 ` Björn Höfling
2018-10-16 6:23 ` Björn Höfling
2018-10-16 8:28 ` Gábor Boskovits
2018-10-16 13:13 ` Laura Lazzati
2018-10-16 22:18 ` Björn Höfling
2018-10-17 1:01 ` Laura Lazzati
2018-10-17 7:17 ` Björn Höfling
2018-10-17 8:21 ` Gábor Boskovits
2018-10-17 14:27 ` Laura Lazzati
2018-10-17 16:38 ` Laura Lazzati
2018-10-17 17:13 ` Clément Lassieur
2018-10-17 17:50 ` Laura Lazzati
2018-10-18 1:36 ` Laura Lazzati
2018-10-18 6:54 ` Björn Höfling
2018-10-18 7:50 ` Gábor Boskovits
2018-10-18 14:49 ` Laura Lazzati
2018-10-18 15:15 ` Gábor Boskovits
2018-10-18 15:25 ` Laura Lazzati
2018-10-18 15:40 ` Gábor Boskovits
2018-10-18 16:18 ` Laura Lazzati
2018-10-18 17:26 ` Laura Lazzati
2018-10-18 17:41 ` Björn Höfling
2018-10-18 18:14 ` Ricardo Wurmus
2018-10-18 18:17 ` Laura Lazzati
2018-10-19 1:05 ` Laura Lazzati
2018-10-19 3:47 ` Laura Lazzati
2018-10-19 6:21 ` Gábor Boskovits
2018-10-19 7:09 ` Ricardo Wurmus
2018-10-19 7:29 ` Gábor Boskovits
2018-10-19 18:37 ` Laura Lazzati
2018-10-19 18:45 ` Gábor Boskovits
2018-10-19 20:35 ` Laura Lazzati
2018-10-19 21:25 ` Gábor Boskovits
2018-10-19 23:10 ` Laura Lazzati
2018-10-20 6:08 ` Björn Höfling
2018-10-20 6:34 ` Gábor Boskovits
2018-10-20 13:47 ` Laura Lazzati
2018-10-20 14:01 ` Ludovic Courtès
2018-11-02 19:44 ` Laura Lazzati [this message]
2018-11-02 20:12 ` Gábor Boskovits
2018-11-02 20:17 ` Laura Lazzati
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