From: Simon Tournier <zimon.toutoune@gmail.com>
To: Ricardo Wurmus <rekado@elephly.net>
Cc: "Timothy Sample" <samplet@ngyro.com>,
"Ludovic Courtès" <ludovic.courtes@inria.fr>,
me@tobias.gr, 39885@debbugs.gnu.org
Subject: bug#39885: Bioconductor tarballs are not archived
Date: Wed, 10 Jan 2024 16:23:41 +0100 [thread overview]
Message-ID: <CAJ3okZ0vUO=gQ13Oasw1-E0zafWu5-va2JJ1f=e_bhS4y_nbBg@mail.gmail.com> (raw)
In-Reply-To: <87y1cx5phh.fsf@elephly.net>
Hi,
On Wed, 10 Jan 2024 at 13:42, Ricardo Wurmus <rekado@elephly.net> wrote:
> Do we have a list of desired tarballs?
I made one. :-) I will share the manifest once a bit more polish. ;-)
Roughly, until 3.11 -- for earlier, I am still fighting with
time-machine -- and only the versions right before a Bioconductor
upgrade (and sadly not the version after such upgrade that, for many
have disappeared from Bioconductor). If you have them, cool! Well,
for now, I am speaking about all the Bioconductor packages except
annotations for these Guix revisions:
--8<---------------cut here---------------start------------->8---
git log --format="%P %s" --after=2019-04-30 \
| grep -i -E 'bioconductor' | grep -i -E '(update|upgrade)' \
| cut -f1 -d' ' \
| head -8
--8<---------------cut here---------------end--------------->8---
And for instance, I have this kind of sources.json.
--8<---------------cut here---------------start------------->8---
{
"sources": [
{
"type": "url",
"urls": [
"https://bordeaux.guix.gnu.org/file/progeny_1.22.0.tar.gz/sha256/047x6by3xa15gvi3kny5pkqxaq8d2kzcfi55ic5j7a351715l6l7",
"https://ci.guix.gnu.org/file/progeny_1.22.0.tar.gz/sha256/047x6by3xa15gvi3kny5pkqxaq8d2kzcfi55ic5j7a351715l6l7",
"https://bioconductor.org/packages/3.17/bioc/src/contrib/progeny_1.22.0.tar.gz",
"https://tarballs.nixos.org/sha256/047x6by3xa15gvi3kny5pkqxaq8d2kzcfi55ic5j7a351715l6l7"
],
"integrity": "sha256-hxpawgllqCMLi6VEx/4UDWHV8bzF2znifiWoPvwy/RA=",
"outputHashAlgo": "sha256",
"outputHashMode": "flat"
},
{
"type": "url",
"urls": [
"https://bordeaux.guix.gnu.org/file/AWFisher_1.14.0.tar.gz/sha256/1c6rr1z1rhvn8w1kb3nnjlfacfr22vwm1rsa1xqm2hmghs01bq4x",
"https://ci.guix.gnu.org/file/AWFisher_1.14.0.tar.gz/sha256/1c6rr1z1rhvn8w1kb3nnjlfacfr22vwm1rsa1xqm2hmghs01bq4x",
"https://bioconductor.org/packages/3.17/bioc/src/contrib/AWFisher_1.14.0.tar.gz",
"https://tarballs.nixos.org/sha256/1c6rr1z1rhvn8w1kb3nnjlfacfr22vwm1rsa1xqm2hmghs01bq4x"
],
"integrity": "sha256-neAVgIavQlFxD0rnUPkWIjumHJXWjjUDR3bDHH7I2bA=",
"outputHashAlgo": "sha256",
"outputHashMode": "flat"
},
--8<---------------cut here---------------end--------------->8---
Where the URL for ci.guix is incorrect, I guess.
Cheers,
simon
next prev parent reply other threads:[~2024-01-10 15:24 UTC|newest]
Thread overview: 31+ messages / expand[flat|nested] mbox.gz Atom feed top
2020-03-03 15:59 bug#39885: Bioconductor URI, fallback and time-machine zimoun
2020-03-23 21:20 ` Ricardo Wurmus
2020-05-21 23:29 ` zimoun
2020-06-24 11:07 ` zimoun
2020-06-28 20:14 ` Ludovic Courtès
2020-06-29 17:36 ` zimoun
2020-06-29 20:42 ` Ludovic Courtès
2020-11-19 14:22 ` zimoun
2021-11-22 19:48 ` zimoun
2022-07-18 16:03 ` zimoun
2022-07-18 16:21 ` Ricardo Wurmus
2022-08-10 18:25 ` Ricardo Wurmus
2022-08-10 19:44 ` Maxime Devos
2022-08-10 19:48 ` Maxime Devos
2022-09-09 17:23 ` zimoun
2024-01-08 15:07 ` Ludovic Courtès
2024-01-08 15:34 ` Ricardo Wurmus
2024-01-11 16:11 ` Simon Tournier
2023-12-22 13:40 ` bug#39885: Bioconductor tarballs are not archived Ludovic Courtès
2024-01-08 9:09 ` Simon Tournier
2024-01-08 15:02 ` Ludovic Courtès
2024-01-10 12:41 ` Ricardo Wurmus
2024-01-10 15:23 ` Simon Tournier [this message]
2024-01-19 15:46 ` Timothy Sample
2024-01-23 9:10 ` Ludovic Courtès
2024-02-14 15:23 ` Simon Tournier
2024-02-16 16:14 ` Timothy Sample
2024-02-19 16:50 ` Simon Tournier
2024-02-21 18:16 ` Timothy Sample
2023-12-22 20:57 ` bug#39885: Bioconductor URI, fallback and time-machine Ludovic Courtès
2024-01-02 9:20 ` Simon Tournier
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