From: Maxim Cournoyer <maxim.cournoyer@gmail.com>
To: "Ludovic Courtès" <ludovic.courtes@inria.fr>
Cc: 49467-done@debbugs.gnu.org
Subject: bug#49467: python-scanpy 1.7.2 tests failing with SIGILL
Date: Tue, 03 Oct 2023 23:41:10 -0400 [thread overview]
Message-ID: <87mswz2gx5.fsf@gmail.com> (raw)
In-Reply-To: <8735solmk0.fsf@inria.fr> ("Ludovic Courtès"'s message of "Thu, 08 Jul 2021 19:53:19 +0200")
Hi Ludo,
Ludovic Courtès <ludovic.courtes@inria.fr> writes:
> On an x86_64 machine, I’ve seen this:
>
> $ guix build python-scanpy --no-grafts --check
>
> […]
>
> starting phase `check'
> ============================= test session starts ==============================
> platform linux -- Python 3.8.2, pytest-5.3.5, py-1.8.1, pluggy-0.13.1
> rootdir: /tmp/guix-build-python-scanpy-1.7.2.drv-0/scanpy-1.7.2
> plugins: hypothesis-5.4.1, cov-2.8.1, black-0.3.8
> Fatal Python error: Illegal instruction
>
> Current thread 0x00007ffff785c300 (most recent call first):
> File "<frozen importlib._bootstrap>", line 219 in _call_with_frames_removed
> File "<frozen importlib._bootstrap_external>", line 1109 in exec_module
> File "<frozen importlib._bootstrap>", line 671 in _load_unlocked
> File "<frozen importlib._bootstrap>", line 975 in _find_and_load_unlocked
> File "<frozen importlib._bootstrap>", line 991 in _find_and_load
> File "<frozen importlib._bootstrap>", line 219 in _call_with_frames_removed
> File "<frozen importlib._bootstrap>", line 1042 in _handle_fromlist
> File "/gnu/store/368d0i579ga5sbc3mms4bg7bd4lzj6km-python-numcodecs-0.6.4/lib/python3.8/site-packages/numcodecs/__init
[...]
> File "/gnu/store/436410968f8mpdlsn1pw456mpgwmbh4m-python-pytest-5.3.5/lib/python3.8/site-packages/_pytest/runner.py", line 237 in from_call
> File "/gnu/store/436410968f8mpdlsn1pw456mpgwmbh4m-python-pytest-5.3.5/lib/python3.8/site-packages/_pytest/runner.py", line 257 in pytest_make_collect_report
> File "/gnu/store/nqi6xqx8h2fxldi3xbigkc24wfzzsy5j-python-pluggy-0.13.1/lib/python3.8/site-packages/pluggy/callers.py", line 187 in _multicall
> File "/gnu/store/nqi6xqx8h2fxldi3xbigkc24wfzzsy5j-python-pluggy-0.13.1/lib/python3.8/site-packages/pluggy/manager.py", line 84 in <lambda>
> File "/gnu/store/nqi6xqx8h2fxldi3xbigkc24wfzzsy5j-python-pluggy-0.13.1/lib/python3.8/site-packages/pluggy/manager.py", line 93 in _hookexec
> File "/gnu/store/nqi6xqx8h2fxldi3xbigkc24wfzzsy5j-python-pluggy-0.13.1/lib/python3.8/site-packages/pluggy/hooks.py", line 286 in __call__
> File "/gnu/store/436410968f8mpdlsn1pw456mpgwmbh4m-python-pytest-5.3.5/lib/python3.8/site-packages/_pytest/runner.py", line 379 in collect_one_node
> ...
> command "pytest" failed with signal 4
> builder for `/gnu/store/xdqc4a2xhkiknasj8rk36gl3gr5iswr8-python-scanpy-1.7.2.drv' failed with exit code 1
> build of /gnu/store/xdqc4a2xhkiknasj8rk36gl3gr5iswr8-python-scanpy-1.7.2.drv failed
>
> It would seem that one of these dependencies has code using x86_64 ISA
> extensions that this particular CPU doesn’t support.
>
> Thoughts?
I don't reproduce with
/gnu/store/0ch25pmwnxl8vfdwiqz3rk9n4hmmhj39-python-scanpy-1.9.1 on an
old x86_64 CPU (Intel Q6700).
I'm assuming for the best and closing :-)
--
Thanks,
Maxim
prev parent reply other threads:[~2023-10-04 3:42 UTC|newest]
Thread overview: 2+ messages / expand[flat|nested] mbox.gz Atom feed top
2021-07-08 17:53 bug#49467: python-scanpy 1.7.2 tests failing with SIGILL Ludovic Courtès
2023-10-04 3:41 ` Maxim Cournoyer [this message]
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