From: Maxim Cournoyer <maxim.cournoyer@gmail.com>
To: 34882@debbugs.gnu.org
Subject: [bug#34882] [PATCH] Update to Pandas, enable Excel writer support
Date: Fri, 15 Mar 2019 23:48:27 -0400 [thread overview]
Message-ID: <87k1gzqy2c.fsf@gmail.com> (raw)
[-- Attachment #1: 0001-gnu-Add-python-et-xmlfile.patch --]
[-- Type: text/x-patch, Size: 2443 bytes --]
From 4903d5a179a0a441910217653285226981905c4e Mon Sep 17 00:00:00 2001
From: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Date: Fri, 11 Jan 2019 11:25:54 -0500
Subject: [PATCH 1/5] gnu: Add python-et-xmlfile.
* gnu/packages/python.scm (python-et-xmlfile): New variable.
---
gnu/packages/python-xyz.scm | 35 ++++++++++++++++++++++++++++++++++-
1 file changed, 34 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index fa2701bc1c..6c2f01e3cc 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -54,7 +54,7 @@
;;; Copyright © 2018 Nicolas Goaziou <mail@nicolasgoaziou.fr>
;;; Copyright © 2018 Oleg Pykhalov <go.wigust@gmail.com>
;;; Copyright © 2018 Clément Lassieur <clement@lassieur.org>
-;;; Copyright © 2018 Maxim Cournoyer <maxim.cournoyer@gmail.com>
+;;; Copyright © 2018, 2019 Maxim Cournoyer <maxim.cournoyer@gmail.com>
;;; Copyright © 2018 Luther Thompson <lutheroto@gmail.com>
;;; Copyright © 2018 Vagrant Cascadian <vagrant@debian.org>
;;; Copyright © 2019 Brett Gilio <brettg@posteo.net>
@@ -832,6 +832,39 @@ messages in color.")
(define-public python2-coloredlogs
(package-with-python2 python-coloredlogs))
+(define-public python-et-xmlfile
+ (package
+ (name "python-et-xmlfile")
+ (version "1.0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "et_xmlfile" version))
+ (sha256
+ (base32
+ "0nrkhcb6jdrlb6pwkvd4rycw34y3s931hjf409ij9xkjsli9fkb1"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases (modify-phases %standard-phases
+ (replace 'check
+ (lambda _
+ (invoke "pytest"))))))
+ (native-inputs
+ `(("python-pytest" ,python-pytest)
+ ("python-lxml" ,python-lxml)))
+ (home-page
+ "https://bitbucket.org/openpyxl/et_xmlfile")
+ (synopsis
+ "Low memory implementation of @code{lxml.xmlfile}")
+ (description
+ "This Python library is based upon the @code{xmlfile} module
+from @code{lxml}. It aims to provide a low memory, compatible implementation
+of @code{xmlfile}.")
+ (license license:expat)))
+
+(define-public python2-et-xmlfile
+ (package-with-python2 python-et-xmlfile))
+
(define-public python-eventlet
(package
(name "python-eventlet")
--
2.20.1
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[-- Attachment #2: 0002-gnu-Add-python-jdcal.patch --]
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From 992f103c131897a1c0f310490cab46dd23e9c625 Mon Sep 17 00:00:00 2001
From: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Date: Fri, 11 Jan 2019 11:26:28 -0500
Subject: [PATCH 2/5] gnu: Add python-jdcal.
* gnu/packages/python.scm (python-jdcal): New variable.
---
gnu/packages/python-xyz.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 6c2f01e3cc..f9595ae2cb 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -1791,6 +1791,36 @@ version numbers.")
(define-public python2-vcversioner
(package-with-python2 python-vcversioner))
+(define-public python-jdcal
+ (package
+ (name "python-jdcal")
+ (version "1.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "jdcal" version))
+ (sha256
+ (base32
+ "1ja6j2xq97bsl6rv09mhdx7n0xnrsfx0mj5xqza0mxghqmkm02pa"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases (modify-phases %standard-phases
+ (replace 'check
+ (lambda _
+ (invoke "pytest"))))))
+ (native-inputs
+ `(("python-pytest" ,python-pytest)))
+ (home-page "https://github.com/phn/jdcal")
+ (synopsis
+ "Functions to convert between Julian dates Gregorian dates")
+ (description
+ "This Python library provides functions for converting between Julian
+dates and Gregorian dates.")
+ (license license:bsd-2)))
+
+(define-public python2-jdcal
+ (package-with-python2 python-jdcal))
+
(define-public python-jsonschema
(package
(name "python-jsonschema")
--
2.20.1
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[-- Attachment #3: 0003-gnu-Add-python-openpyxl.patch --]
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From 4b72713af3e8de61bae8d7a76895a9b2f32f09c9 Mon Sep 17 00:00:00 2001
From: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Date: Fri, 11 Jan 2019 11:27:10 -0500
Subject: [PATCH 3/5] gnu: Add python-openpyxl.
* gnu/packages/python.scm (python-openpyxl): New variable.
---
gnu/packages/python-xyz.scm | 38 +++++++++++++++++++++++++++++++++++++
1 file changed, 38 insertions(+)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index f9595ae2cb..427d6818e2 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -142,6 +142,7 @@
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix git-download)
+ #:use-module (guix hg-download)
#:use-module (guix utils)
#:use-module (guix build-system gnu)
#:use-module (guix build-system cmake)
@@ -865,6 +866,43 @@ of @code{xmlfile}.")
(define-public python2-et-xmlfile
(package-with-python2 python-et-xmlfile))
+(define-public python-openpyxl
+ (package
+ (name "python-openpyxl")
+ (version "2.6.0")
+ (source
+ (origin
+ (method hg-fetch)
+ (uri (hg-reference
+ (url "https://bitbucket.org/openpyxl/openpyxl")
+ (changeset version)))
+ (file-name (string-append name "-" version "-checkout"))
+ (sha256
+ (base32
+ "1x47ngn7ybaqdbvg90c8h2x0j6yfdfj25gjfinp2w5rf62gsany7"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases (modify-phases %standard-phases
+ (replace 'check
+ (lambda _
+ (invoke "pytest"))))))
+ (native-inputs
+ `(("python-lxml" ,python-lxml)
+ ;; For the test suite.
+ ("python-pillow" ,python-pillow)
+ ("python-pytest" ,python-pytest)))
+ (propagated-inputs
+ `(("python-et-xmlfile" ,python-et-xmlfile)
+ ("python-jdcal" ,python-jdcal)))
+ (home-page "https://openpyxl.readthedocs.io")
+ (synopsis
+ "Python library to read/write Excel 2010 XLSX/XLSM files")
+ (description
+ "This Python library allows reading and writing to the Excel XLSX, XLSM,
+XLTX and XLTM file formats that are defined by the Office Open XML (OOXML)
+standard.")
+ (license license:expat)))
+
(define-public python-eventlet
(package
(name "python-eventlet")
--
2.20.1
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From d13e1c487fc63f5ec878a492c048b947b6cb11e7 Mon Sep 17 00:00:00 2001
From: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Date: Fri, 11 Jan 2019 13:24:43 -0500
Subject: [PATCH 4/5] gnu: python-pandas: Enable Excel file format support.
* gnu/packages/python.scm (python-pandas)[phases]{check}: Re-instate the tests
from the test_excel.py module.
* gnu/packages/python.scm (python-pandas)[propagated-inputs]: Add
python-openpyxl and python-xlrd.
---
gnu/packages/python-xyz.scm | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 427d6818e2..321c881f4d 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -1046,7 +1046,6 @@ human-friendly syntax.")
'("pandas/tests/io/conftest.py"
"pandas/tests/io/json/test_compression.py"
"pandas/tests/io/parser/test_network.py"
- "pandas/tests/io/test_excel.py"
"pandas/tests/io/test_parquet.py"))
(invoke "pytest" "-vv" "pandas" "--skip-slow"
"--skip-network" "-k"
@@ -1054,8 +1053,10 @@ human-friendly syntax.")
"not test_read_s3_jsonl"))))))))
(propagated-inputs
`(("python-numpy" ,python-numpy)
+ ("python-openpyxl" ,python-openpyxl)
("python-pytz" ,python-pytz)
- ("python-dateutil" ,python-dateutil)))
+ ("python-dateutil" ,python-dateutil)
+ ("python-xlrd" ,python-xlrd)))
(native-inputs
`(("python-cython" ,python-cython)
("python-beautifulsoup4" ,python-beautifulsoup4)
--
2.20.1
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[-- Attachment #5: 0005-gnu-python-pandas-Update-to-0.24.2.patch --]
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From ad1f0efe4a5c3d28ee9d7e2e5da275721af9e172 Mon Sep 17 00:00:00 2001
From: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Date: Sat, 9 Feb 2019 00:25:51 -0500
Subject: [PATCH 5/5] gnu: python-pandas: Update to 0.24.2.
* gnu/packages/python-xyz.scm (python-pandas): Update to 0.24.2.
[phases]{patch-which}: Add phase.
[inputs]: Add WHICH.
---
gnu/packages/python-xyz.scm | 65 ++++++++++++++++++++++---------------
1 file changed, 38 insertions(+), 27 deletions(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 321c881f4d..bbf1403758 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -1014,56 +1014,67 @@ human-friendly syntax.")
(define-public python-pandas
(package
(name "python-pandas")
- (version "0.23.4")
+ (version "0.24.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pandas" version))
(sha256
- (base32 "1x54pd7hr3y7qahx6b5bf2wzj54xvl8r3s1h4pl254pnmi3wl92v"))))
+ (base32 "18imlm8xbhcbwy4wa957a1fkamrcb0z988z006jpfda3ki09z4ag"))))
(build-system python-build-system)
(arguments
`(#:modules ((guix build utils)
(guix build python-build-system)
(ice-9 ftw)
(srfi srfi-26))
- #:phases (modify-phases %standard-phases
- (replace 'check
- (lambda _
- (let ((build-directory
- (string-append
- (getcwd) "/build/"
- (car (scandir "build"
- (cut string-prefix? "lib." <>))))))
- ;; Disable the "strict data files" option which causes
- ;; the build to error out if required data files are not
- ;; available (as is the case with PyPI archives).
- (substitute* "setup.cfg"
- (("addopts = --strict-data-files") "addopts = "))
- (with-directory-excursion build-directory
- ;; Delete tests that require "moto" which is not yet in Guix.
- (for-each delete-file
- '("pandas/tests/io/conftest.py"
- "pandas/tests/io/json/test_compression.py"
- "pandas/tests/io/parser/test_network.py"
- "pandas/tests/io/test_parquet.py"))
- (invoke "pytest" "-vv" "pandas" "--skip-slow"
- "--skip-network" "-k"
- ;; XXX: Due to the deleted tests above.
- "not test_read_s3_jsonl"))))))))
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'patch-which
+ (lambda* (#:key inputs #:allow-other-keys)
+ (let ((which (assoc-ref inputs "which")))
+ (substitute* "pandas/io/clipboard/__init__.py"
+ (("^CHECK_CMD = .*")
+ (string-append "CHECK_CMD = \"" which "\"\n"))))
+ #t))
+ (replace 'check
+ (lambda _
+ (let ((build-directory
+ (string-append
+ (getcwd) "/build/"
+ (car (scandir "build"
+ (cut string-prefix? "lib." <>))))))
+ ;; Disable the "strict data files" option which causes
+ ;; the build to error out if required data files are not
+ ;; available (as is the case with PyPI archives).
+ (substitute* "setup.cfg"
+ (("addopts = --strict-data-files") "addopts = "))
+ (with-directory-excursion build-directory
+ ;; Delete tests that require "moto" which is not yet in Guix.
+ (for-each delete-file
+ '("pandas/tests/io/conftest.py"
+ "pandas/tests/io/json/test_compression.py"
+ "pandas/tests/io/parser/test_network.py"
+ "pandas/tests/io/test_parquet.py"))
+ (invoke "pytest" "-vv" "pandas" "--skip-slow"
+ "--skip-network" "-k"
+ ;; XXX: Due to the deleted tests above.
+ "not test_read_s3_jsonl"))))))))
(propagated-inputs
`(("python-numpy" ,python-numpy)
("python-openpyxl" ,python-openpyxl)
("python-pytz" ,python-pytz)
("python-dateutil" ,python-dateutil)
("python-xlrd" ,python-xlrd)))
+ (inputs
+ `(("which" ,which)))
(native-inputs
`(("python-cython" ,python-cython)
("python-beautifulsoup4" ,python-beautifulsoup4)
("python-lxml" ,python-lxml)
("python-html5lib" ,python-html5lib)
("python-nose" ,python-nose)
- ("python-pytest" ,python-pytest)))
+ ("python-pytest" ,python-pytest)
+ ("python-pytest-mock" ,python-pytest-mock)))
(home-page "https://pandas.pydata.org")
(synopsis "Data structures for data analysis, time series, and statistics")
(description
--
2.20.1
next reply other threads:[~2019-03-16 4:04 UTC|newest]
Thread overview: 10+ messages / expand[flat|nested] mbox.gz Atom feed top
2019-03-16 3:48 Maxim Cournoyer [this message]
2019-03-17 19:45 ` [bug#34882] [PATCH] Update to Pandas, enable Excel writer support Marius Bakke
2019-03-18 13:18 ` bug#34882: " Maxim Cournoyer
2019-03-18 17:28 ` [bug#34882] " Ricardo Wurmus
2019-03-18 13:50 ` Ricardo Wurmus
2019-03-18 21:04 ` Maxim Cournoyer
2019-03-18 22:34 ` Ricardo Wurmus
2019-03-19 1:15 ` Maxim Cournoyer
2019-03-19 8:41 ` Ricardo Wurmus
2019-03-21 3:14 ` Maxim Cournoyer
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