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| | From a1958c27fd69c20916065e848c9526a29192590e Mon Sep 17 00:00:00 2001
From: Reza Housseini <reza.housseini@gmail.com>
Date: Wed, 30 Nov 2022 14:15:22 +0100
Subject: [PATCH 01/13] chore: fix CGAL and Boost dependencies
---
etc/config.sh/CGAL | 19 ++-----------------
1 file changed, 2 insertions(+), 17 deletions(-)
diff --git a/etc/config.sh/CGAL b/etc/config.sh/CGAL
index 0fec802a0..d80278bcb 100644
--- a/etc/config.sh/CGAL
+++ b/etc/config.sh/CGAL
@@ -39,22 +39,7 @@
#
#------------------------------------------------------------------------------
-boost_version=boost-system
-#boost_version=boost-1.55.0
-#boost_version=boost-1.72.0
-
-cgal_version=cgal-system
-#cgal_version=CGAL-4.10
-#cgal_version=CGAL-5.0.2
-
-if [ "$boost_version" != "boost-system" ]
-then
- export BOOST_ARCH_PATH=$WM_THIRD_PARTY_DIR/$boost_version
-fi
-
-if [ "$cgal_version" != "cgal-system" ]
-then
- export CGAL_ARCH_PATH=$WM_THIRD_PARTY_DIR/$cgal_version
-fi
+export CGAL_ARCH_PATH=$CGAL_ROOT
+export BOOST_ARCH_PATH=$BOOST_ROOT
#------------------------------------------------------------------------------
--
2.38.1
From 06a6f8587daf3e81d3b55c3b47e1606de5a3d1d2 Mon Sep 17 00:00:00 2001
From: Reza Housseini <reza.housseini@gmail.com>
Date: Wed, 30 Nov 2022 14:15:44 +0100
Subject: [PATCH 02/13] chore: fix gperftools dependecy
---
etc/config.sh/gperftools | 9 +--------
1 file changed, 1 insertion(+), 8 deletions(-)
diff --git a/etc/config.sh/gperftools b/etc/config.sh/gperftools
index f9cdb8533..41aea7802 100644
--- a/etc/config.sh/gperftools
+++ b/etc/config.sh/gperftools
@@ -29,13 +29,6 @@
#
#------------------------------------------------------------------------------
-version=svn
-gperftools_install=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER
-
-GPERFTOOLS_VERSION=gperftools-$version
-GPERFTOOLS_ARCH_PATH=$gperftools_install/$GPERFTOOLS_VERSION
-
-export PATH=$GPERFTOOLS_ARCH_PATH/bin:$PATH
-export LD_LIBRARY_PATH=$GPERFTOOLS_ARCH_PATH/lib:$LD_LIBRARY_PATH
+export GPERFTOOLS_ARCH_PATH=$GPERFTOOLS_ROOT
#------------------------------------------------------------------------------
--
2.38.1
From ca42aa17d1a9cf75dd197886351012d8d52b7b54 Mon Sep 17 00:00:00 2001
From: Reza Housseini <reza.housseini@gmail.com>
Date: Wed, 30 Nov 2022 14:16:13 +0100
Subject: [PATCH 03/13] chore: fix metis dependency
---
etc/config.sh/metis | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/etc/config.sh/metis b/etc/config.sh/metis
index 40ef6aa0f..d04d5ea32 100644
--- a/etc/config.sh/metis
+++ b/etc/config.sh/metis
@@ -34,7 +34,7 @@
#
#------------------------------------------------------------------------------
-export METIS_VERSION=metis-5.1.0
-export METIS_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION/$METIS_VERSION
+export METIS_VERSION=metis-$METISVERSION
+export METIS_ARCH_PATH=$METIS_ROOT
#------------------------------------------------------------------------------
--
2.38.1
From 6c4801f8274391c2926ee6792dc3f8fbd3d67c73 Mon Sep 17 00:00:00 2001
From: Reza Housseini <reza.housseini@gmail.com>
Date: Wed, 30 Nov 2022 14:17:08 +0100
Subject: [PATCH 04/13] chore: fix mpi dependency
---
etc/config.sh/mpi | 233 +-----------------
.../decompose/ptscotchDecomp/Make/options | 2 +-
2 files changed, 11 insertions(+), 224 deletions(-)
diff --git a/etc/config.sh/mpi b/etc/config.sh/mpi
index b368cc51a..79efff92d 100644
--- a/etc/config.sh/mpi
+++ b/etc/config.sh/mpi
@@ -30,234 +30,21 @@
#
#------------------------------------------------------------------------------
-unset MPI_ARCH_PATH MPI_HOME FOAM_MPI_LIBBIN
+export FOAM_MPI=openmpi-$OPENMPIVERSION
+# Optional configuration tweaks:
+_foamSource `$WM_PROJECT_DIR/bin/foamEtcFile config.sh/openmpi`
-case "$WM_MPLIB" in
-SYSTEMOPENMPI)
- # Use the system installed openmpi, get library directory via mpicc
- export FOAM_MPI=openmpi-system
+export MPI_ARCH_PATH=$OPENMPI_ROOT
- # Undefine OPAL_PREFIX if set to one of the paths on foamOldDirs
- if [ -z "$($foamClean "$OPAL_PREFIX" "$foamOldDirs")" ]
- then
- unset OPAL_PREFIX
- fi
+# Tell OpenMPI where to find its install directory
+export OPAL_PREFIX=$MPI_ARCH_PATH
- libDir=`mpicc --showme:link | sed -e 's/.*-L\([^ ]*\).*/\1/'`
+_foamAddPath $MPI_ARCH_PATH/bin
- # Bit of a hack: strip off 'lib' and hope this is the path to openmpi
- # include files and libraries.
- export MPI_ARCH_PATH="${libDir%/*}"
+# 64-bit on OpenSuSE 12.1 uses lib64 others use lib
+_foamAddLib $MPI_ARCH_PATH/lib
- _foamAddLib $libDir
- unset libDir
- ;;
-
-OPENMPI)
- export FOAM_MPI=openmpi-2.1.1
- # Optional configuration tweaks:
- _foamSource `$WM_PROJECT_DIR/bin/foamEtcFile config.sh/openmpi`
-
- export MPI_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$FOAM_MPI
-
- # Tell OpenMPI where to find its install directory
- export OPAL_PREFIX=$MPI_ARCH_PATH
-
- _foamAddPath $MPI_ARCH_PATH/bin
-
- # 64-bit on OpenSuSE 12.1 uses lib64 others use lib
- _foamAddLib $MPI_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH
- _foamAddLib $MPI_ARCH_PATH/lib
-
- _foamAddMan $MPI_ARCH_PATH/share/man
- ;;
-
-SYSTEMMPI)
- export FOAM_MPI=mpi-system
-
- if [ -z "$MPI_ROOT" ]
- then
- echo 1>&2
- echo "Warning in $WM_PROJECT_DIR/etc/config.sh/settings:" 1>&2
- echo " Please set the environment variable MPI_ROOT to point to" \
- " the base folder for the system MPI in use." 1>&2
- echo " Example:" 1>&2
- echo 1>&2
- echo " export MPI_ROOT=/opt/mpi" 1>&2
- echo 1>&2
- else
- export MPI_ARCH_PATH=$MPI_ROOT
-
- if [ -z "$MPI_ARCH_FLAGS" ]
- then
- echo 1>&2
- echo "Warning in $WM_PROJECT_DIR/etc/config.sh/settings:" 1>&2
- echo " MPI_ARCH_FLAGS is not set. Example:" 1>&2
- echo 1>&2
- echo " export MPI_ARCH_FLAGS=\"-DOMPI_SKIP_MPICXX\"" 1>&2
- echo 1>&2
- fi
-
- if [ -z "$MPI_ARCH_INC" ]
- then
- echo 1>&2
- echo "Warning in $WM_PROJECT_DIR/etc/config.sh/settings:" 1>&2
- echo " MPI_ARCH_INC is not set. Example:" 1>&2
- echo 1>&2
- echo " export MPI_ARCH_INC=\"-isystem \$MPI_ROOT/include\"" 1>&2
- echo 1>&2
- fi
-
- if [ -z "$MPI_ARCH_LIBS" ]
- then
- echo 1>&2
- echo "Warning in $WM_PROJECT_DIR/etc/config.sh/settings:" 1>&2
- echo " MPI_ARCH_LIBS is not set. Example:" 1>&2
- echo 1>&2
- echo " export MPI_ARCH_LIBS=\"-L\$MPI_ROOT/lib -lmpi\"" 1>&2
- echo 1>&2
- fi
- fi
- ;;
-
-MPICH)
- export FOAM_MPI=mpich2-1.1.1p1
- export MPI_HOME=$WM_THIRD_PARTY_DIR/$FOAM_MPI
- export MPI_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$FOAM_MPI
-
- _foamAddPath $MPI_ARCH_PATH/bin
-
- # 64-bit on OpenSuSE 12.1 uses lib64 others use lib
- _foamAddLib $MPI_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH
- _foamAddLib $MPI_ARCH_PATH/lib
-
- _foamAddMan $MPI_ARCH_PATH/share/man
- ;;
-
-MPICH-GM)
- export FOAM_MPI=mpich-gm
- export MPI_ARCH_PATH=/opt/mpi
- export MPICH_PATH=$MPI_ARCH_PATH
- export GM_LIB_PATH=/opt/gm/lib64
-
- _foamAddPath $MPI_ARCH_PATH/bin
-
- # 64-bit on OpenSuSE 12.1 uses lib64 others use lib
- _foamAddLib $MPI_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH
- _foamAddLib $MPI_ARCH_PATH/lib
-
- _foamAddLib $GM_LIB_PATH
- ;;
-
-MV2MPI)
- export FOAM_MPI=mvapich2
- libDir=`mpicc -show -cc= | sed -e 's/.*-L\([^ ]*\).*/\1/'`
- export MPI_ARCH_PATH="${libDir%/*}"
- _foamAddLib $libDir
- unset libDir
- ;;
-
-HPMPI)
- export FOAM_MPI=hpmpi
- export MPI_HOME=/opt/hpmpi
- export MPI_ARCH_PATH=$MPI_HOME
-
- _foamAddPath $MPI_ARCH_PATH/bin
-
- case `uname -m` in
- i686)
- _foamAddLib $MPI_ARCH_PATH/lib/linux_ia32
- ;;
-
- x86_64)
- _foamAddLib $MPI_ARCH_PATH/lib/linux_amd64
- ;;
- *)
- echo Unknown processor type `uname -m` 1>&2
- ;;
- esac
- ;;
-
-MPI)
- export FOAM_MPI=mpi
- export MPI_ARCH_PATH=/opt/mpi
- ;;
-
-FJMPI)
- export FOAM_MPI=fjmpi
- export MPI_ARCH_PATH=/opt/FJSVmpi2
-
- _foamAddPath $MPI_ARCH_PATH/bin
- _foamAddLib $MPI_ARCH_PATH/lib/sparcv9
- _foamAddLib /opt/FSUNf90/lib/sparcv9
- _foamAddLib /opt/FJSVpnidt/lib
- ;;
-
-QSMPI)
- export FOAM_MPI=qsmpi
- export MPI_ARCH_PATH=/usr/lib/mpi
-
- _foamAddPath $MPI_ARCH_PATH/bin
- _foamAddLib $MPI_ARCH_PATH/lib
- ;;
-
-SGIMPI)
- # No trailing slash
- [ "${MPI_ROOT%/}" = "${MPI_ROOT}" ] || MPI_ROOT="${MPI_ROOT%/}"
-
- export FOAM_MPI="${MPI_ROOT##*/}"
- export MPI_ARCH_PATH=$MPI_ROOT
-
- if [ ! -d "$MPI_ROOT" -o -z "$MPI_ARCH_PATH" ]
- then
- echo "Warning in $WM_PROJECT_DIR/etc/config.sh/settings:" 1>&2
- echo " MPI_ROOT not a valid mpt installation directory or ending" \
- " in a '/'." 1>&2
- echo " Please set MPI_ROOT to the mpt installation directory." 1>&2
- echo " MPI_ROOT currently set to '$MPI_ROOT'" 1>&2
- fi
-
- if [ "$FOAM_VERBOSE" -a "$PS1" ]
- then
- echo "Using SGI MPT:" 1>&2
- echo " MPI_ROOT : $MPI_ROOT" 1>&2
- echo " FOAM_MPI : $FOAM_MPI" 1>&2
- fi
-
- _foamAddPath $MPI_ARCH_PATH/bin
- _foamAddLib $MPI_ARCH_PATH/lib
- ;;
-
-INTELMPI)
- # No trailing slash
- [ "${MPI_ROOT%/}" = "${MPI_ROOT}" ] || MPI_ROOT="${MPI_ROOT%/}"
-
- export FOAM_MPI="${MPI_ROOT##*/}"
- export MPI_ARCH_PATH=$MPI_ROOT
-
- if [ ! -d "$MPI_ROOT" -o -z "$MPI_ARCH_PATH" ]
- then
- echo "Warning in $WM_PROJECT_DIR/etc/config.sh/settings:" 1>&2
- echo " MPI_ROOT not a valid mpt installation directory or ending" \
- " in a '/'." 1>&2
- echo " Please set MPI_ROOT to the mpt installation directory." 1>&2
- echo " MPI_ROOT currently set to '$MPI_ROOT'" 1>&2
- fi
-
- if [ "$FOAM_VERBOSE" -a "$PS1" ]
- then
- echo "Using INTEL MPI:" 1>&2
- echo " MPI_ROOT : $MPI_ROOT" 1>&2
- echo " FOAM_MPI : $FOAM_MPI" 1>&2
- fi
-
- _foamAddPath $MPI_ARCH_PATH/bin64
- _foamAddLib $MPI_ARCH_PATH/lib/release
- ;;
-*)
- export FOAM_MPI=dummy
- ;;
-esac
+_foamAddMan $MPI_ARCH_PATH/share/man
# Add (non-dummy) MPI implementation
# Dummy MPI already added to LD_LIBRARY_PATH and has no external libraries
diff --git a/src/parallel/decompose/ptscotchDecomp/Make/options b/src/parallel/decompose/ptscotchDecomp/Make/options
index 2af0fddac..00eb03bff 100644
--- a/src/parallel/decompose/ptscotchDecomp/Make/options
+++ b/src/parallel/decompose/ptscotchDecomp/Make/options
@@ -10,7 +10,7 @@ EXE_INC = \
LIB_LIBS = \
-L$(SCOTCH_ARCH_PATH)/lib \
- -L$(FOAM_EXT_LIBBIN)/$(FOAM_MPI) \
+ -L$(MPI_ARCH_PATH)/lib \
-lptscotch \
-lptscotcherrexit \
-lscotch \
--
2.38.1
From 6eef353c56ee4086389f4631cc83f24d34a1587c Mon Sep 17 00:00:00 2001
From: Reza Housseini <reza.housseini@gmail.com>
Date: Wed, 30 Nov 2022 14:19:45 +0100
Subject: [PATCH 05/13] chore: fix scotch dependency
---
etc/config.sh/scotch | 4 ++--
src/parallel/decompose/ptscotchDecomp/Make/options | 1 -
src/parallel/decompose/scotchDecomp/Make/options | 2 --
3 files changed, 2 insertions(+), 5 deletions(-)
diff --git a/etc/config.sh/scotch b/etc/config.sh/scotch
index a345a2d00..39266deda 100644
--- a/etc/config.sh/scotch
+++ b/etc/config.sh/scotch
@@ -37,7 +37,7 @@
#
#------------------------------------------------------------------------------
-export SCOTCH_VERSION=scotch_6.0.9
-export SCOTCH_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION/$SCOTCH_VERSION
+export SCOTCH_VERSION=scotch_$PT_SCOTCH32VERSION
+export SCOTCH_ARCH_PATH=$PT_SCOTCH32_ROOT
#------------------------------------------------------------------------------
diff --git a/src/parallel/decompose/ptscotchDecomp/Make/options b/src/parallel/decompose/ptscotchDecomp/Make/options
index 00eb03bff..993f9f2aa 100644
--- a/src/parallel/decompose/ptscotchDecomp/Make/options
+++ b/src/parallel/decompose/ptscotchDecomp/Make/options
@@ -5,7 +5,6 @@ EXE_INC = \
-I$(FOAM_SRC)/Pstream/mpi/lnInclude \
-I$(SCOTCH_ARCH_PATH)/include/$(FOAM_MPI) \
-I$(SCOTCH_ARCH_PATH)/include \
- -I/usr/include/scotch \
-I../decompositionMethods/lnInclude
LIB_LIBS = \
diff --git a/src/parallel/decompose/scotchDecomp/Make/options b/src/parallel/decompose/scotchDecomp/Make/options
index 038f88d5f..f57b8ee14 100644
--- a/src/parallel/decompose/scotchDecomp/Make/options
+++ b/src/parallel/decompose/scotchDecomp/Make/options
@@ -6,12 +6,10 @@
EXE_INC = \
$(PFLAGS) $(PINC) \
-I$(SCOTCH_ARCH_PATH)/include \
- -I/usr/include/scotch \
-I../decompositionMethods/lnInclude
LIB_LIBS = \
-L$(SCOTCH_ARCH_PATH)/lib \
- -L$(FOAM_EXT_LIBBIN) \
-lscotch \
-lscotcherrexit \
-lrt
--
2.38.1
From 564e1c51f496666e057c28a6c3eb4512e9adf8b4 Mon Sep 17 00:00:00 2001
From: Reza Housseini <reza.housseini@gmail.com>
Date: Wed, 30 Nov 2022 14:20:49 +0100
Subject: [PATCH 06/13] chore: fix GMP and MPFR dependency
---
etc/config.sh/settings | 3 +++
wmake/rules/General/CGAL | 4 ++--
2 files changed, 5 insertions(+), 2 deletions(-)
diff --git a/etc/config.sh/settings b/etc/config.sh/settings
index d48896bac..3067d4608 100644
--- a/etc/config.sh/settings
+++ b/etc/config.sh/settings
@@ -290,6 +290,9 @@ OpenFOAM | ThirdParty)
;;
system)
# Use system compiler
+ # Use system GMP and MPFR packages
+ export GMP_ARCH_PATH=$GMP_ROOT
+ export MPFR_ARCH_PATH=$MPFR_ROOT
;;
*)
echo "Warn: WM_COMPILER_TYPE='$WM_COMPILER_TYPE' is unsupported" 1>&2
diff --git a/wmake/rules/General/CGAL b/wmake/rules/General/CGAL
index 4c574c283..1c6d3b55d 100644
--- a/wmake/rules/General/CGAL
+++ b/wmake/rules/General/CGAL
@@ -8,7 +8,7 @@ CGAL_INC = \
$(if $(CGAL_ARCH_PATH),-I$(CGAL_ARCH_PATH)/include,-I/usr/include)
CGAL_LIBS = \
- $(if $(GMP_ARCH_PATH),-L$(GMP_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH),) \
+ $(if $(GMP_ARCH_PATH),-L$(GMP_ARCH_PATH)/lib,) \
-lgmp \
- $(if $(MPFR_ARCH_PATH),-L$(MPFR_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH),) \
+ $(if $(MPFR_ARCH_PATH),-L$(MPFR_ARCH_PATH)/lib,) \
-lmpfr
--
2.38.1
From 579f94cfac2867d9875b2254d122e465ccc5d6b0 Mon Sep 17 00:00:00 2001
From: Reza Housseini <reza.housseini@gmail.com>
Date: Wed, 30 Nov 2022 14:21:32 +0100
Subject: [PATCH 07/13] build: add LDFLAGS environment variable to compile step
---
wmake/rules/linux64Gcc/c++ | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/wmake/rules/linux64Gcc/c++ b/wmake/rules/linux64Gcc/c++
index 9ba6ce377..3ced6c9fb 100644
--- a/wmake/rules/linux64Gcc/c++
+++ b/wmake/rules/linux64Gcc/c++
@@ -22,8 +22,8 @@ cpptoo = $(Ctoo)
LINK_LIBS = $(c++DBUG)
-LINKLIBSO = $(CC) $(c++FLAGS) -fuse-ld=bfd -shared \
+LINKLIBSO = $(CC) $(c++FLAGS) $(LDFLAGS) -fuse-ld=bfd -shared \
-Xlinker --add-needed -Xlinker --no-as-needed
-LINKEXE = $(CC) $(c++FLAGS) -fuse-ld=bfd \
+LINKEXE = $(CC) $(c++FLAGS) $(LDFLAGS) -fuse-ld=bfd \
-Xlinker --add-needed -Xlinker --no-as-needed
--
2.38.1
From e5007b8b65c459c256dcb1700453ba608bc111fe Mon Sep 17 00:00:00 2001
From: Reza Housseini <reza.housseini@gmail.com>
Date: Wed, 30 Nov 2022 14:22:25 +0100
Subject: [PATCH 08/13] fix: wrong symbolic link path
---
tutorials/mesh/snappyHexMesh/iglooWithFridges | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/tutorials/mesh/snappyHexMesh/iglooWithFridges b/tutorials/mesh/snappyHexMesh/iglooWithFridges
index 3d18de2c2..ef42b45b3 120000
--- a/tutorials/mesh/snappyHexMesh/iglooWithFridges
+++ b/tutorials/mesh/snappyHexMesh/iglooWithFridges
@@ -1 +1 @@
-../../heatTransfer/buoyantSimpleFoam/iglooWithFridges
\ No newline at end of file
+../../heatTransfer/buoyantFoam/iglooWithFridges
\ No newline at end of file
--
2.38.1
From 448f3b83c782c6f28a8b028793f10a178e10db73 Mon Sep 17 00:00:00 2001
From: Reza Housseini <reza.housseini@gmail.com>
Date: Wed, 30 Nov 2022 14:23:47 +0100
Subject: [PATCH 09/13] chore: fix gnuplot dependency
---
applications/test/Distribution2/createGraphs | 2 +-
.../test/rigidBodyDynamics/Test-rigidBodyDynamics.C | 2 +-
bin/foamMonitor | 4 ++--
bin/tools/HookFunctions | 2 +-
etc/bashrc | 2 ++
.../graph/writers/gnuplotGraph/gnuplotGraph.H | 2 +-
src/sampling/sampledSet/writers/gnuplot/gnuplotSetWriter.H | 2 +-
.../waterAndIsopropanolEvaporation/Allrun | 2 +-
.../interfaceComposition/waterEvaporation/Allrun | 2 +-
.../populationBalance/binaryBreakup/validation/createGraphs | 4 ++--
.../populationBalance/breakup/validation/createGraphs | 4 ++--
.../populationBalance/coalescence/validation/createGraphs | 4 ++--
.../populationBalance/drift/validation/createGraphs | 4 ++--
.../isothermalGrowth/validation/createGraphs | 4 ++--
.../populationBalance/negativeDrift/validation/createGraphs | 4 ++--
.../validation/createGraphs | 4 ++--
.../multiphaseEulerFoam/thermal/waterEvaporation/Allrun | 2 +-
tutorials/combustion/chemFoam/gri/validation/createGraph | 4 ++--
tutorials/combustion/chemFoam/h2/validation/createGraph | 4 ++--
tutorials/combustion/chemFoam/ic8h18/validation/createGraph | 4 ++--
.../combustion/chemFoam/ic8h18_TDAC/validation/createGraph | 4 ++--
tutorials/combustion/chemFoam/nc7h16/validation/createGraph | 4 ++--
.../rhoPimpleFoam/laminar/helmholtzResonance/Allrun | 2 +-
.../buoyantFoam/buoyantCavity/validation/createGraphs | 6 +++---
.../boundaryFoam/boundaryWallFunctionsProfile/Allrun | 4 ++--
.../incompressible/pimpleFoam/RAS/ballValve/createGraphs | 4 ++--
.../pimpleFoam/laminar/nonConformalChannel/Allrun | 2 +-
.../laminar/planarPoiseuille/validation/createGraph | 4 ++--
.../incompressible/simpleFoam/T3A/validation/createGraphs | 4 ++--
.../simpleFoam/roomResidenceTime/validation/Allrun | 2 +-
.../RAS/Grossetete/validation/createGraphs | 4 ++--
.../RAS/bubblePipe/validation/createGraphs | 6 +++---
.../RAS/pipeBend/validation/createGraphs | 6 +++---
.../RAS/wallBoiling/validation/createGraphs | 4 ++--
.../RAS/wallBoilingIATE/validation/createGraphs | 4 ++--
.../RAS/wallBoilingPolydisperse/validation/createGraphs | 4 ++--
.../validation/createGraphs | 4 ++--
.../laminar/titaniaSynthesis/validation/createGraphs | 6 +++---
.../laminar/titaniaSynthesisSurface/validation/createGraphs | 6 +++---
39 files changed, 72 insertions(+), 70 deletions(-)
diff --git a/applications/test/Distribution2/createGraphs b/applications/test/Distribution2/createGraphs
index bbcb522f0..58b9c0388 100755
--- a/applications/test/Distribution2/createGraphs
+++ b/applications/test/Distribution2/createGraphs
@@ -1,6 +1,6 @@
#!/bin/sh
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps color enhanced font "Helvetica,15"
set output 'comparison.eps'
set multiplot layout 2, 1
diff --git a/applications/test/rigidBodyDynamics/Test-rigidBodyDynamics.C b/applications/test/rigidBodyDynamics/Test-rigidBodyDynamics.C
index c13edfe73..1b2dbe689 100644
--- a/applications/test/rigidBodyDynamics/Test-rigidBodyDynamics.C
+++ b/applications/test/rigidBodyDynamics/Test-rigidBodyDynamics.C
@@ -98,7 +98,7 @@ int main(int argc, char *argv[])
}
dataFile<< endl;
animationFile
- << "#!/usr/bin/env gnuplot" << endl << endl
+ << "$GNUPLOT" << endl << endl
<< "$data << end" << endl;
// Run the RBD simulation
diff --git a/bin/foamMonitor b/bin/foamMonitor
index 32b62d792..def3d902a 100755
--- a/bin/foamMonitor
+++ b/bin/foamMonitor
@@ -98,7 +98,7 @@ title="Data Monitoring"
size=""
gpterminal='x11 1 font "helvetica,17" linewidth 1.5 persist noraise'
-command -v gnuplot >/dev/null 2>&1 || error "Gnuplot not installed"
+command -v $GNUPLOT >/dev/null 2>&1 || error "Gnuplot not installed"
# parse options
while [ "$#" -gt 0 ]
@@ -197,7 +197,7 @@ done
plotFileFooter >> "$gp_file"
touch "$file"
-gnuplot "$gp_file" &
+$GNUPLOT "$gp_file" &
pid=$!
while true
diff --git a/bin/tools/HookFunctions b/bin/tools/HookFunctions
index 47af55043..193e4fc03 100644
--- a/bin/tools/HookFunctions
+++ b/bin/tools/HookFunctions
@@ -391,7 +391,7 @@ checkBanner() # scope, files...
errorMessages+=("$file")
fi
;;
- (''|awk|csh|gnuplot|sed|sh)
+ (''|awk|csh|$GNUPLOT|sed|sh)
if ! git show $scopeShow"$file" | pcregrep -q -M "$scriptBanner"
then
((++errorCount))
diff --git a/etc/bashrc b/etc/bashrc
index 663993951..c93e47974 100644
--- a/etc/bashrc
+++ b/etc/bashrc
@@ -229,3 +229,5 @@ unset cleaned foamClean foamOldDirs
[ "$BASH" ] && . $WM_PROJECT_DIR/etc/config.sh/bash_completion
#------------------------------------------------------------------------------
+
+export GNUPLOT=gnuplot
diff --git a/src/randomProcesses/graph/writers/gnuplotGraph/gnuplotGraph.H b/src/randomProcesses/graph/writers/gnuplotGraph/gnuplotGraph.H
index 9c2df4377..95d940285 100644
--- a/src/randomProcesses/graph/writers/gnuplotGraph/gnuplotGraph.H
+++ b/src/randomProcesses/graph/writers/gnuplotGraph/gnuplotGraph.H
@@ -54,7 +54,7 @@ class gnuplotGraph
public:
//- Runtime type information
- TypeName("gnuplot");
+ TypeName("$GNUPLOT");
//- FileName extension for this graph format
static const word ext_;
diff --git a/src/sampling/sampledSet/writers/gnuplot/gnuplotSetWriter.H b/src/sampling/sampledSet/writers/gnuplot/gnuplotSetWriter.H
index b8e031085..f358f869d 100644
--- a/src/sampling/sampledSet/writers/gnuplot/gnuplotSetWriter.H
+++ b/src/sampling/sampledSet/writers/gnuplot/gnuplotSetWriter.H
@@ -53,7 +53,7 @@ class gnuplotSetWriter
public:
//- Runtime type information
- TypeName("gnuplot");
+ TypeName("$GNUPLOT");
// Constructors
diff --git a/test/multiphase/multiphaseEulerFoam/interfaceComposition/waterAndIsopropanolEvaporation/Allrun b/test/multiphase/multiphaseEulerFoam/interfaceComposition/waterAndIsopropanolEvaporation/Allrun
index 9dfacf68e..19e8a825a 100755
--- a/test/multiphase/multiphaseEulerFoam/interfaceComposition/waterAndIsopropanolEvaporation/Allrun
+++ b/test/multiphase/multiphaseEulerFoam/interfaceComposition/waterAndIsopropanolEvaporation/Allrun
@@ -31,7 +31,7 @@ do
done
done
-gnuplot << EOF
+$GNUPLOT << EOF
set terminal eps enhanced size 5.83,8.27
set output 'postProcessing.eps'
diff --git a/test/multiphase/multiphaseEulerFoam/interfaceComposition/waterEvaporation/Allrun b/test/multiphase/multiphaseEulerFoam/interfaceComposition/waterEvaporation/Allrun
index 9641b9c49..377009f46 100755
--- a/test/multiphase/multiphaseEulerFoam/interfaceComposition/waterEvaporation/Allrun
+++ b/test/multiphase/multiphaseEulerFoam/interfaceComposition/waterEvaporation/Allrun
@@ -64,7 +64,7 @@ do
done
done
-gnuplot << EOF
+$GNUPLOT << EOF
set terminal eps enhanced size 5.83,8.27
set output 'postProcessing.eps'
diff --git a/test/multiphase/multiphaseEulerFoam/populationBalance/binaryBreakup/validation/createGraphs b/test/multiphase/multiphaseEulerFoam/populationBalance/binaryBreakup/validation/createGraphs
index 673b293c7..7bfee48c3 100755
--- a/test/multiphase/multiphaseEulerFoam/populationBalance/binaryBreakup/validation/createGraphs
+++ b/test/multiphase/multiphaseEulerFoam/populationBalance/binaryBreakup/validation/createGraphs
@@ -1,12 +1,12 @@
#!/bin/sh
-if ! which gnuplot > /dev/null 2>&1
+if ! which $GNUPLOT > /dev/null 2>&1
then
echo 'gnuplot not found - skipping graph creation' >&2
exit 1
fi
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps color enhanced "Helvetica,20"
set output '../numberDensity.eps'
set decimalsign '.'
diff --git a/test/multiphase/multiphaseEulerFoam/populationBalance/breakup/validation/createGraphs b/test/multiphase/multiphaseEulerFoam/populationBalance/breakup/validation/createGraphs
index 673b293c7..7bfee48c3 100755
--- a/test/multiphase/multiphaseEulerFoam/populationBalance/breakup/validation/createGraphs
+++ b/test/multiphase/multiphaseEulerFoam/populationBalance/breakup/validation/createGraphs
@@ -1,12 +1,12 @@
#!/bin/sh
-if ! which gnuplot > /dev/null 2>&1
+if ! which $GNUPLOT > /dev/null 2>&1
then
echo 'gnuplot not found - skipping graph creation' >&2
exit 1
fi
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps color enhanced "Helvetica,20"
set output '../numberDensity.eps'
set decimalsign '.'
diff --git a/test/multiphase/multiphaseEulerFoam/populationBalance/coalescence/validation/createGraphs b/test/multiphase/multiphaseEulerFoam/populationBalance/coalescence/validation/createGraphs
index 2f9808388..fba7ed5f7 100755
--- a/test/multiphase/multiphaseEulerFoam/populationBalance/coalescence/validation/createGraphs
+++ b/test/multiphase/multiphaseEulerFoam/populationBalance/coalescence/validation/createGraphs
@@ -1,12 +1,12 @@
#!/bin/sh
-if ! which gnuplot > /dev/null 2>&1
+if ! which $GNUPLOT > /dev/null 2>&1
then
echo 'gnuplot not found - skipping graph creation' >&2
exit 1
fi
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps color enhanced "Helvetica,20"
set output '../numberDensity.eps'
set decimalsign '.'
diff --git a/test/multiphase/multiphaseEulerFoam/populationBalance/drift/validation/createGraphs b/test/multiphase/multiphaseEulerFoam/populationBalance/drift/validation/createGraphs
index ddb779992..b0c11ad36 100755
--- a/test/multiphase/multiphaseEulerFoam/populationBalance/drift/validation/createGraphs
+++ b/test/multiphase/multiphaseEulerFoam/populationBalance/drift/validation/createGraphs
@@ -1,12 +1,12 @@
#!/bin/sh
-if ! which gnuplot > /dev/null 2>&1
+if ! which $GNUPLOT > /dev/null 2>&1
then
echo 'gnuplot not found - skipping graph creation' >&2
exit 1
fi
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps color enhanced "Helvetica,20"
set output '../numberDensity.eps'
set decimalsign '.'
diff --git a/test/multiphase/multiphaseEulerFoam/populationBalance/isothermalGrowth/validation/createGraphs b/test/multiphase/multiphaseEulerFoam/populationBalance/isothermalGrowth/validation/createGraphs
index 843ccf677..923932605 100755
--- a/test/multiphase/multiphaseEulerFoam/populationBalance/isothermalGrowth/validation/createGraphs
+++ b/test/multiphase/multiphaseEulerFoam/populationBalance/isothermalGrowth/validation/createGraphs
@@ -1,12 +1,12 @@
#!/bin/sh
-if ! which gnuplot > /dev/null 2>&1
+if ! which $GNUPLOT > /dev/null 2>&1
then
echo 'gnuplot not found - skipping graph creation' >&2
exit 1
fi
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps color enhanced "Helvetica,20"
set output '../d.air_y.eps'
diff --git a/test/multiphase/multiphaseEulerFoam/populationBalance/negativeDrift/validation/createGraphs b/test/multiphase/multiphaseEulerFoam/populationBalance/negativeDrift/validation/createGraphs
index bae86a939..6047f55d3 100755
--- a/test/multiphase/multiphaseEulerFoam/populationBalance/negativeDrift/validation/createGraphs
+++ b/test/multiphase/multiphaseEulerFoam/populationBalance/negativeDrift/validation/createGraphs
@@ -1,12 +1,12 @@
#!/bin/sh
-if ! which gnuplot > /dev/null 2>&1
+if ! which $GNUPLOT > /dev/null 2>&1
then
echo 'gnuplot not found - skipping graph creation' >&2
exit 1
fi
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps color enhanced "Helvetica,20"
set output '../numberDensity.eps'
set decimalsign '.'
diff --git a/test/multiphase/multiphaseEulerFoam/populationBalance/simultaneousCoalescenceAndBreakup/validation/createGraphs b/test/multiphase/multiphaseEulerFoam/populationBalance/simultaneousCoalescenceAndBreakup/validation/createGraphs
index da0e70401..7840728f5 100755
--- a/test/multiphase/multiphaseEulerFoam/populationBalance/simultaneousCoalescenceAndBreakup/validation/createGraphs
+++ b/test/multiphase/multiphaseEulerFoam/populationBalance/simultaneousCoalescenceAndBreakup/validation/createGraphs
@@ -1,12 +1,12 @@
#!/bin/sh
-if ! which gnuplot > /dev/null 2>&1
+if ! which $GNUPLOT > /dev/null 2>&1
then
echo 'gnuplot not found - skipping graph creation' >&2
exit 1
fi
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps color enhanced "Helvetica,20"
set output '../probabilityDensity.eps'
set decimalsign '.'
diff --git a/test/multiphase/multiphaseEulerFoam/thermal/waterEvaporation/Allrun b/test/multiphase/multiphaseEulerFoam/thermal/waterEvaporation/Allrun
index 432ac9f2b..3a789aef0 100755
--- a/test/multiphase/multiphaseEulerFoam/thermal/waterEvaporation/Allrun
+++ b/test/multiphase/multiphaseEulerFoam/thermal/waterEvaporation/Allrun
@@ -38,7 +38,7 @@ do
done
done
-gnuplot << EOF
+$GNUPLOT << EOF
set terminal eps enhanced size 5.83,8.27
set output 'postProcessing.eps'
diff --git a/tutorials/combustion/chemFoam/gri/validation/createGraph b/tutorials/combustion/chemFoam/gri/validation/createGraph
index d0fb9cc01..f3a350f24 100755
--- a/tutorials/combustion/chemFoam/gri/validation/createGraph
+++ b/tutorials/combustion/chemFoam/gri/validation/createGraph
@@ -1,12 +1,12 @@
#!/bin/sh
-if ! which gnuplot > /dev/null 2>&1
+if ! which $GNUPLOT > /dev/null 2>&1
then
echo "gnuplot not found - skipping graph creation" >&2
exit 1
fi
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps color enhanced "Helveicta,20"
set output "OF_vs_CHEMKINII.eps"
set xlabel "Time / [s]" font "Helveicta,24"
diff --git a/tutorials/combustion/chemFoam/h2/validation/createGraph b/tutorials/combustion/chemFoam/h2/validation/createGraph
index bbb36218f..0fc008261 100755
--- a/tutorials/combustion/chemFoam/h2/validation/createGraph
+++ b/tutorials/combustion/chemFoam/h2/validation/createGraph
@@ -1,12 +1,12 @@
#!/bin/sh
-if ! which gnuplot > /dev/null 2>&1
+if ! which $GNUPLOT > /dev/null 2>&1
then
echo "gnuplot not found - skipping graph creation" >&2
exit 1
fi
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps color enhanced "Helvetica,20"
set output "OF_vs_CHEMKINII.eps"
set xlabel "Time / [s]" font "Helvetica,24"
diff --git a/tutorials/combustion/chemFoam/ic8h18/validation/createGraph b/tutorials/combustion/chemFoam/ic8h18/validation/createGraph
index 4606eac7d..43af24856 100755
--- a/tutorials/combustion/chemFoam/ic8h18/validation/createGraph
+++ b/tutorials/combustion/chemFoam/ic8h18/validation/createGraph
@@ -1,12 +1,12 @@
#!/bin/sh
-if ! which gnuplot > /dev/null 2>&1
+if ! which $GNUPLOT > /dev/null 2>&1
then
echo "gnuplot not found - skipping graph creation" >&2
exit 1
fi
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps color enhanced "Helvetica,20"
set output "OF_vs_CHEMKINII.eps"
set xlabel "Time / [s]" font "Helvetica,24"
diff --git a/tutorials/combustion/chemFoam/ic8h18_TDAC/validation/createGraph b/tutorials/combustion/chemFoam/ic8h18_TDAC/validation/createGraph
index 901919282..218212998 100755
--- a/tutorials/combustion/chemFoam/ic8h18_TDAC/validation/createGraph
+++ b/tutorials/combustion/chemFoam/ic8h18_TDAC/validation/createGraph
@@ -1,12 +1,12 @@
#!/bin/sh
-if ! which gnuplot > /dev/null 2>&1
+if ! which $GNUPLOT > /dev/null 2>&1
then
echo "gnuplot not found - skipping graph creation" >&2
exit 1
fi
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps color enhanced "Helvetica,20"
set output "OF_vs_CHEMKINII.eps"
set xlabel "Time / [s]" font "Helvetica,24"
diff --git a/tutorials/combustion/chemFoam/nc7h16/validation/createGraph b/tutorials/combustion/chemFoam/nc7h16/validation/createGraph
index b2f8a4d94..ad074b8e2 100755
--- a/tutorials/combustion/chemFoam/nc7h16/validation/createGraph
+++ b/tutorials/combustion/chemFoam/nc7h16/validation/createGraph
@@ -1,12 +1,12 @@
#!/bin/sh
-if ! which gnuplot > /dev/null 2>&1
+if ! which $GNUPLOT > /dev/null 2>&1
then
echo "gnuplot not found - skipping graph creation" >&2
exit 1
fi
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps color enhanced "Helvetica,20"
set output "OF_vs_CHEMKINII.eps"
set xlabel "Time / [s]" font "Helvetica,24"
diff --git a/tutorials/compressible/rhoPimpleFoam/laminar/helmholtzResonance/Allrun b/tutorials/compressible/rhoPimpleFoam/laminar/helmholtzResonance/Allrun
index 6557c1075..5219a3efb 100755
--- a/tutorials/compressible/rhoPimpleFoam/laminar/helmholtzResonance/Allrun
+++ b/tutorials/compressible/rhoPimpleFoam/laminar/helmholtzResonance/Allrun
@@ -31,7 +31,7 @@ run resolved
run modelled
# Plot a comparison of the pressure in the neck
-cat << EOF | gnuplot -persist
+cat << EOF | $GNUPLOT -persist
set terminal postscript eps size 5,4 enhanced color
diff --git a/tutorials/heatTransfer/buoyantFoam/buoyantCavity/validation/createGraphs b/tutorials/heatTransfer/buoyantFoam/buoyantCavity/validation/createGraphs
index 625b87946..ba4cf4670 100755
--- a/tutorials/heatTransfer/buoyantFoam/buoyantCavity/validation/createGraphs
+++ b/tutorials/heatTransfer/buoyantFoam/buoyantCavity/validation/createGraphs
@@ -42,7 +42,7 @@ createEpsT()
OF=$2
EXPT=$3
- gnuplot<<EOF
+ $GNUPLOT<<EOF
set terminal postscript eps color enhanced
set output "OF_vs_EXPT_T$i.eps"
set xlabel "Channel width, x / [m]"
@@ -66,7 +66,7 @@ createEpsU()
OF=$2
EXPT=$3
- gnuplot<<EOF
+ $GNUPLOT<<EOF
set terminal postscript eps color enhanced
set output "OF_vs_EXPT_U$i.eps"
set xlabel "Channel width, x / [m]"
@@ -86,7 +86,7 @@ EOF
echo "createGraphs:"
# test if gnuplot exists on the system
-if ! which gnuplot > /dev/null 2>&1
+if ! which $GNUPLOT > /dev/null 2>&1
then
echo "FOAM FATAL ERROR: gnuplot not found - skipping graph creation" >&2
exit 1
diff --git a/tutorials/incompressible/boundaryFoam/boundaryWallFunctionsProfile/Allrun b/tutorials/incompressible/boundaryFoam/boundaryWallFunctionsProfile/Allrun
index 98d5a8635..4ff7fa9e9 100755
--- a/tutorials/incompressible/boundaryFoam/boundaryWallFunctionsProfile/Allrun
+++ b/tutorials/incompressible/boundaryFoam/boundaryWallFunctionsProfile/Allrun
@@ -37,7 +37,7 @@ done
# create validation plot
# test if gnuplot exists on the system
-if ! which gnuplot > /dev/null 2>&1
+if ! which $GNUPLOT > /dev/null 2>&1
then
echo "gnuplot not found - skipping graph creation" >&2
exit 1
@@ -46,7 +46,7 @@ fi
graphName="OF_vs_ANALYTICAL.eps"
echo "Creating graph of u+ vs y+ to $graphName"
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps color enhanced
set output "$graphName"
set grid
diff --git a/tutorials/incompressible/pimpleFoam/RAS/ballValve/createGraphs b/tutorials/incompressible/pimpleFoam/RAS/ballValve/createGraphs
index 57e466f77..9f078e6d3 100755
--- a/tutorials/incompressible/pimpleFoam/RAS/ballValve/createGraphs
+++ b/tutorials/incompressible/pimpleFoam/RAS/ballValve/createGraphs
@@ -6,7 +6,7 @@ inletFlowRate=postProcessing/inletFlowRate/0/surfaceFieldValue.dat
lowerOutletFlowRate=postProcessing/lowerOutletFlowRate/0/surfaceFieldValue.dat
upperOutletFlowRate=postProcessing/upperOutletFlowRate/0/surfaceFieldValue.dat
-gnuplot << EOF
+$GNUPLOT << EOF
set terminal postscript eps color enhanced
set output "flowRate.eps"
set xlabel "Time (s)"
@@ -19,7 +19,7 @@ plot \
us 1:(\$2+\$4) w l t "Total Outlet"
EOF
-gnuplot << EOF
+$GNUPLOT << EOF
set terminal postscript eps color enhanced
set output "error.eps"
set xlabel "Time (s)"
diff --git a/tutorials/incompressible/pimpleFoam/laminar/nonConformalChannel/Allrun b/tutorials/incompressible/pimpleFoam/laminar/nonConformalChannel/Allrun
index 970f45e67..e9524165e 100755
--- a/tutorials/incompressible/pimpleFoam/laminar/nonConformalChannel/Allrun
+++ b/tutorials/incompressible/pimpleFoam/laminar/nonConformalChannel/Allrun
@@ -33,7 +33,7 @@ outletFlowRateAMI=postProcessing/outletFlowRate.AMI/0/surfaceFieldValue.dat
inletFlowRateNonConformalCyclic=postProcessing/inletFlowRate.nonConformalCyclic/0/surfaceFieldValue.dat
outletFlowRateNonConformalCyclic=postProcessing/outletFlowRate.nonConformalCyclic/0/surfaceFieldValue.dat
-gnuplot << EOF
+$GNUPLOT << EOF
set terminal postscript eps color enhanced
set output "error.eps"
set xlabel "Time (s)"
diff --git a/tutorials/incompressible/pimpleFoam/laminar/planarPoiseuille/validation/createGraph b/tutorials/incompressible/pimpleFoam/laminar/planarPoiseuille/validation/createGraph
index 53fee3647..06df26399 100755
--- a/tutorials/incompressible/pimpleFoam/laminar/planarPoiseuille/validation/createGraph
+++ b/tutorials/incompressible/pimpleFoam/laminar/planarPoiseuille/validation/createGraph
@@ -3,13 +3,13 @@
tail -n +4 ../postProcessing/probes/0/U | \
tr -s " " | tr -d '(' | cut -d " " -f1-2 > ../Numerical.dat
-if ! which gnuplot > /dev/null 2>&1
+if ! which $GNUPLOT > /dev/null 2>&1
then
echo "gnuplot not found - skipping graph creation" >&2
exit 1
fi
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps color enhanced "Helvetica,20"
set output "planarPoiseuille.eps"
set xlabel "Time / [s]" font "Helvetica,24"
diff --git a/tutorials/incompressible/simpleFoam/T3A/validation/createGraphs b/tutorials/incompressible/simpleFoam/T3A/validation/createGraphs
index e7a91615f..71b8d5f27 100755
--- a/tutorials/incompressible/simpleFoam/T3A/validation/createGraphs
+++ b/tutorials/incompressible/simpleFoam/T3A/validation/createGraphs
@@ -1,6 +1,6 @@
#!/bin/sh
-if ! which gnuplot > /dev/null 2>&1
+if ! which $GNUPLOT > /dev/null 2>&1
then
echo "gnuplot not found - skipping graph creation" >&2
exit 1
@@ -8,7 +8,7 @@ fi
time=$(foamListTimes -case .. -latestTime)
-gnuplot<<EOF
+$GNUPLOT<<EOF
set term post enhanced color solid linewidth 2.0 20
set out "graphs.eps"
set encoding utf8
diff --git a/tutorials/incompressible/simpleFoam/roomResidenceTime/validation/Allrun b/tutorials/incompressible/simpleFoam/roomResidenceTime/validation/Allrun
index 9bf0240c8..914728a93 100755
--- a/tutorials/incompressible/simpleFoam/roomResidenceTime/validation/Allrun
+++ b/tutorials/incompressible/simpleFoam/roomResidenceTime/validation/Allrun
@@ -32,6 +32,6 @@ done < "ageValues"
paste positionsZ ageDimless2 > Pos2_OF
# ------ Plot the results
-gnuplot plot*
+$GNUPLOT plot*
#------------------------------------------------------------------------------
diff --git a/tutorials/multiphase/multiphaseEulerFoam/RAS/Grossetete/validation/createGraphs b/tutorials/multiphase/multiphaseEulerFoam/RAS/Grossetete/validation/createGraphs
index 69e308bbf..e768b6c84 100755
--- a/tutorials/multiphase/multiphaseEulerFoam/RAS/Grossetete/validation/createGraphs
+++ b/tutorials/multiphase/multiphaseEulerFoam/RAS/Grossetete/validation/createGraphs
@@ -1,12 +1,12 @@
#!/bin/sh
-if ! which gnuplot > /dev/null 2>&1
+if ! which $GNUPLOT > /dev/null 2>&1
then
echo 'gnuplot not found - skipping graph creation' >&2
exit 1
fi
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps color enhanced font "Helvetica,20"
set output '../void_fraction.eps'
diff --git a/tutorials/multiphase/multiphaseEulerFoam/RAS/bubblePipe/validation/createGraphs b/tutorials/multiphase/multiphaseEulerFoam/RAS/bubblePipe/validation/createGraphs
index 354f3bbc1..7251cd4f8 100755
--- a/tutorials/multiphase/multiphaseEulerFoam/RAS/bubblePipe/validation/createGraphs
+++ b/tutorials/multiphase/multiphaseEulerFoam/RAS/bubblePipe/validation/createGraphs
@@ -1,6 +1,6 @@
#!/bin/sh
-if ! which gnuplot > /dev/null 2>&1
+if ! which $GNUPLOT > /dev/null 2>&1
then
echo 'gnuplot not found - skipping graph creation' >&2
exit 1
@@ -10,7 +10,7 @@ time=$(foamListTimes -case .. -latestTime)
graphFile=../postProcessing/graph/$time/line.xy
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps color enhanced font "Helvetica,20"
set output '../void_fraction.eps'
@@ -34,7 +34,7 @@ EOF
injectionFile=../postProcessing/probabilityDensity.injection/$time/probabilityDensity.injection.xy
outletFile=../postProcessing/probabilityDensity.outlet/$time/probabilityDensity.outlet.xy
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps color enhanced font "Helvetica,20"
set output '../volumeDensity.eps'
diff --git a/tutorials/multiphase/multiphaseEulerFoam/RAS/pipeBend/validation/createGraphs b/tutorials/multiphase/multiphaseEulerFoam/RAS/pipeBend/validation/createGraphs
index 87f35b9ac..495a70746 100755
--- a/tutorials/multiphase/multiphaseEulerFoam/RAS/pipeBend/validation/createGraphs
+++ b/tutorials/multiphase/multiphaseEulerFoam/RAS/pipeBend/validation/createGraphs
@@ -1,6 +1,6 @@
#!/bin/sh
-if ! which gnuplot > /dev/null 2>&1
+if ! which $GNUPLOT > /dev/null 2>&1
then
echo 'gnuplot not found - skipping graph creation' >&2
exit 1
@@ -15,7 +15,7 @@ afterBend7D=../postProcessing/probabilityDensity.afterBend_7d/$time/probabilityD
afterBend9D=../postProcessing/probabilityDensity.afterBend_9d/$time/probabilityDensity.afterBend_9d.xy
layerAverage=../postProcessing/graphCrossSection/$time/layerAverage.xy
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps color enhanced font "Helvetica,20"
set output '../volumeDensity.eps'
@@ -31,7 +31,7 @@ gnuplot<<EOF
"$afterBend9D" u (\$1*1e6):(\$2) w histeps lw 3 lc rgb 'blue' t 'After bend: 9D'
EOF
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps color enhanced font "Helvetica,20"
set output '../crossSectionAverageDiameter.eps'
diff --git a/tutorials/multiphase/multiphaseEulerFoam/RAS/wallBoiling/validation/createGraphs b/tutorials/multiphase/multiphaseEulerFoam/RAS/wallBoiling/validation/createGraphs
index a33e21dec..21ae8273c 100755
--- a/tutorials/multiphase/multiphaseEulerFoam/RAS/wallBoiling/validation/createGraphs
+++ b/tutorials/multiphase/multiphaseEulerFoam/RAS/wallBoiling/validation/createGraphs
@@ -1,6 +1,6 @@
#!/bin/sh
-if ! which gnuplot > /dev/null 2>&1
+if ! which $GNUPLOT > /dev/null 2>&1
then
echo 'gnuplot not found - skipping graph creation' >&2
exit 1
@@ -9,7 +9,7 @@ fi
graphFile=$(foamListTimes -latestTime)/line.xy
surfaceFile=$(cd postProcessing/inflow && ls -1tr */* | tail -n 1)
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps size 8,9 color enhanced font "Helvetica,20"
set output "./validation/$(basename "$PWD").eps"
diff --git a/tutorials/multiphase/multiphaseEulerFoam/RAS/wallBoilingIATE/validation/createGraphs b/tutorials/multiphase/multiphaseEulerFoam/RAS/wallBoilingIATE/validation/createGraphs
index dcfceca79..d1ae68f9c 100755
--- a/tutorials/multiphase/multiphaseEulerFoam/RAS/wallBoilingIATE/validation/createGraphs
+++ b/tutorials/multiphase/multiphaseEulerFoam/RAS/wallBoilingIATE/validation/createGraphs
@@ -1,6 +1,6 @@
#!/bin/sh
-if ! which gnuplot > /dev/null 2>&1
+if ! which $GNUPLOT > /dev/null 2>&1
then
echo 'gnuplot not found - skipping graph creation' >&2
exit 1
@@ -9,7 +9,7 @@ fi
graphFile=$(foamListTimes -latestTime)/line.xy
surfaceFile=$(cd postProcessing/inflow && ls -1tr */* | tail -n 1)
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps size 8,9 color enhanced font "Helvetica,20"
set output "./validation/$(basename "$PWD").eps"
diff --git a/tutorials/multiphase/multiphaseEulerFoam/RAS/wallBoilingPolydisperse/validation/createGraphs b/tutorials/multiphase/multiphaseEulerFoam/RAS/wallBoilingPolydisperse/validation/createGraphs
index dcfceca79..d1ae68f9c 100755
--- a/tutorials/multiphase/multiphaseEulerFoam/RAS/wallBoilingPolydisperse/validation/createGraphs
+++ b/tutorials/multiphase/multiphaseEulerFoam/RAS/wallBoilingPolydisperse/validation/createGraphs
@@ -1,6 +1,6 @@
#!/bin/sh
-if ! which gnuplot > /dev/null 2>&1
+if ! which $GNUPLOT > /dev/null 2>&1
then
echo 'gnuplot not found - skipping graph creation' >&2
exit 1
@@ -9,7 +9,7 @@ fi
graphFile=$(foamListTimes -latestTime)/line.xy
surfaceFile=$(cd postProcessing/inflow && ls -1tr */* | tail -n 1)
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps size 8,9 color enhanced font "Helvetica,20"
set output "./validation/$(basename "$PWD").eps"
diff --git a/tutorials/multiphase/multiphaseEulerFoam/RAS/wallBoilingPolydisperseTwoGroups/validation/createGraphs b/tutorials/multiphase/multiphaseEulerFoam/RAS/wallBoilingPolydisperseTwoGroups/validation/createGraphs
index 82a2a0364..0e4870fdb 100755
--- a/tutorials/multiphase/multiphaseEulerFoam/RAS/wallBoilingPolydisperseTwoGroups/validation/createGraphs
+++ b/tutorials/multiphase/multiphaseEulerFoam/RAS/wallBoilingPolydisperseTwoGroups/validation/createGraphs
@@ -1,6 +1,6 @@
#!/bin/sh
-if ! which gnuplot > /dev/null 2>&1
+if ! which $GNUPLOT > /dev/null 2>&1
then
echo 'gnuplot not found - skipping graph creation' >&2
exit 1
@@ -9,7 +9,7 @@ fi
graphFile=$(foamListTimes -latestTime)/line.xy
surfaceFile=$(cd postProcessing/inflow && ls -1tr */* | tail -n 1)
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps size 8,9 color enhanced font "Helvetica,20"
set output "./validation/$(basename "$PWD").eps"
diff --git a/tutorials/multiphase/multiphaseEulerFoam/laminar/titaniaSynthesis/validation/createGraphs b/tutorials/multiphase/multiphaseEulerFoam/laminar/titaniaSynthesis/validation/createGraphs
index e93c7d850..16094a6a1 100755
--- a/tutorials/multiphase/multiphaseEulerFoam/laminar/titaniaSynthesis/validation/createGraphs
+++ b/tutorials/multiphase/multiphaseEulerFoam/laminar/titaniaSynthesis/validation/createGraphs
@@ -1,6 +1,6 @@
#!/bin/sh
-if ! which gnuplot > /dev/null 2>&1
+if ! which $GNUPLOT > /dev/null 2>&1
then
echo 'gnuplot not found - skipping graph creation' >&2
exit 1
@@ -10,7 +10,7 @@ time=$(foamListTimes -case .. -latestTime)
graphFile=../postProcessing/graph/$time/line.xy
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps color enhanced font "Helvetica,20"
set output '../species.eps'
@@ -29,7 +29,7 @@ EOF
resultFile=../postProcessing/numberDensity/$time/numberDensity.xy
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps color enhanced font "Helvetica,20"
set output '../sizeDistribution.eps'
diff --git a/tutorials/multiphase/multiphaseEulerFoam/laminar/titaniaSynthesisSurface/validation/createGraphs b/tutorials/multiphase/multiphaseEulerFoam/laminar/titaniaSynthesisSurface/validation/createGraphs
index e93c7d850..d9c4b668c 100755
--- a/tutorials/multiphase/multiphaseEulerFoam/laminar/titaniaSynthesisSurface/validation/createGraphs
+++ b/tutorials/multiphase/multiphaseEulerFoam/laminar/titaniaSynthesisSurface/validation/createGraphs
@@ -1,6 +1,6 @@
#!/bin/sh
-if ! which gnuplot > /dev/null 2>&1
+if ! which $GNUPLOT > /dev/null 2>&1
then
echo 'gnuplot not found - skipping graph creation' >&2
exit 1
@@ -10,7 +10,7 @@ time=$(foamListTimes -case .. -latestTime)
graphFile=../postProcessing/graph/$time/line.xy
-gnuplot<<EOF
+$GNUPLOTt<<EOF
set terminal postscript eps color enhanced font "Helvetica,20"
set output '../species.eps'
@@ -29,7 +29,7 @@ EOF
resultFile=../postProcessing/numberDensity/$time/numberDensity.xy
-gnuplot<<EOF
+$GNUPLOT<<EOF
set terminal postscript eps color enhanced font "Helvetica,20"
set output '../sizeDistribution.eps'
--
2.38.1
From 384e1ace9024d375cb3de593598bc155270491af Mon Sep 17 00:00:00 2001
From: Reza Housseini <reza.housseini@gmail.com>
Date: Wed, 30 Nov 2022 14:14:53 +0100
Subject: [PATCH 10/13] chore: fix paraview dependency
---
bin/paraFoam | 9 +--
etc/config.sh/paraview | 142 +++++------------------------------------
2 files changed, 18 insertions(+), 133 deletions(-)
diff --git a/bin/paraFoam b/bin/paraFoam
index 78911fdce..91b2681e8 100755
--- a/bin/paraFoam
+++ b/bin/paraFoam
@@ -63,9 +63,9 @@ error() {
pvExec () {
if [ "$ParaView_GL" = mesa ]
then
- LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$ParaView_LIB_DIR/mesa paraview "$@"
+ LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$ParaView_LIB_DIR/mesa $PARAVIEW "$@"
else
- paraview "$@"
+ $PARAVIEW "$@"
fi
}
@@ -154,11 +154,6 @@ do
esac
done
-# Check that reader module has been built
-[ $requirePV -eq 1 ] && \
- ! [ -f "$PV_PLUGIN_PATH/libPVFoamReader_SM.so" ] && \
- noPVReader && exit 1
-
# Check for --data=... argument
hasDataArg()
{
diff --git a/etc/config.sh/paraview b/etc/config.sh/paraview
index 97826c1ca..daa2719e8 100644
--- a/etc/config.sh/paraview
+++ b/etc/config.sh/paraview
@@ -33,137 +33,27 @@
# are required for building plugins
#------------------------------------------------------------------------------
-# Clean the PATH
-cleaned=$($WM_PROJECT_DIR/bin/foamCleanPath "$PATH" \
- "$ParaView_DIR \
- $WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/cmake- \
- $WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/paraview-" \
- ) \
- && PATH="$cleaned"
-
-# Determine the cmake to be used. Take the most recent.
-unset CMAKE_HOME CMAKE_ROOT
-for cmake in $WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/cmake-*
-do
- if [ -d $cmake ]
- then
- if [ -z $CMAKE_HOME ] || \
- $WM_PROJECT_DIR/bin/tools/foamVersionCompare $CMAKE_HOME lt $cmake
- then
- export CMAKE_HOME=$cmake
- export CMAKE_ROOT=$cmake
- fi
- fi
-done
-if [ -n $CMAKE_HOME ]
-then
- export PATH=$cmake/bin:$PATH
-fi
-
#- ParaView version, automatically determine major version
-#export ParaView_VERSION=4.0.1
-#export ParaView_VERSION=4.1.0
-#export ParaView_VERSION=4.3.1
-#export ParaView_VERSION=4.4.0
-#export ParaView_VERSION=5.0.0
-#export ParaView_VERSION=5.0.1
-#export ParaView_VERSION=5.4.0
-#export ParaView_VERSION=5.5.0
-export ParaView_VERSION=5.6.3
-export ParaView_MAJOR=detect
-
-#export ParaView_GL=system
-export ParaView_GL=mesa
-
-# Evaluate command-line parameters for ParaView
-_foamParaviewEval()
-{
- while [ $# -gt 0 ]
- do
- case "$1" in
- ParaView*=*)
- # name=value -> export name=value
- eval "export $1"
- ;;
- esac
- shift
- done
-}
-
-# Evaluate command-line parameters
-_foamParaviewEval $@
-
-# Set MAJOR version to correspond to VERSION
-# ParaView_MAJOR is "<digits>.<digits>" from ParaView_VERSION
-case "$ParaView_VERSION" in
-"$ParaView_MAJOR".* )
- # Version and major appear to correspond
- ;;
-
-[0-9]*)
- # Extract major from the version
- ParaView_MAJOR=$(echo $ParaView_VERSION | \
- sed -e 's/^\([0-9][0-9]*\.[0-9][0-9]*\).*$/\1/')
- ;;
-esac
-export ParaView_VERSION ParaView_MAJOR
+export ParaView_MAJOR=$(echo $PARAVIEWVERSION | sed -e 's/^\([0-9][0-9]*\.[0-9][0-9]*\).*$/\1/')
+export ParaView_VERSION=$ParaView_MAJOR
# Set the binary and source directories
-export ParaView_DIR=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/ParaView-$ParaView_VERSION
-paraviewSrcDir=$WM_THIRD_PARTY_DIR/ParaView-$ParaView_VERSION
-
-# Set paths if binaries or source are present
-if [ -d $ParaView_DIR -o -d $paraviewSrcDir ]
-then
- export ParaView_INCLUDE_DIR=$ParaView_DIR/include/paraview-$ParaView_MAJOR
-
- paraviewArch=
- if [ -d $ParaView_DIR/lib64 ]
- then
- paraviewArch=64
- fi
- paraviewLibSubDir=
- if $WM_PROJECT_DIR/bin/tools/foamVersionCompare $ParaView_VERSION lt 5.5.0
- then
- paraviewLibSubDir=/paraview-$ParaView_MAJOR
- fi
- export ParaView_LIB_DIR=$ParaView_DIR/lib$paraviewArch$paraviewLibSubDir
+export ParaView_DIR=$PARAVIEW_ROOT
+export PARAVIEW=$ParaView_DIR/bin/paraview
- export PATH=$ParaView_DIR/bin:$PATH
- export LD_LIBRARY_PATH=$ParaView_LIB_DIR:$LD_LIBRARY_PATH
- export PV_PLUGIN_PATH=$FOAM_LIBBIN/paraview-$ParaView_MAJOR
+# Set paths
+export ParaView_INCLUDE_DIR=$ParaView_DIR/include/paraview-$ParaView_MAJOR
+export ParaView_LIB_DIR=$ParaView_DIR/lib/paraview-$ParaView_MAJOR
+export LD_LIBRARY_PATH=$ParaView_LIB_DIR:$LD_LIBRARY_PATH
+export PV_PLUGIN_PATH=$FOAM_LIBBIN/paraview-$ParaView_MAJOR
- if [ "$FOAM_VERBOSE" -a "$PS1" ]
- then
- echo "Using paraview"
- echo " ParaView_DIR : $ParaView_DIR"
- echo " ParaView_LIB_DIR : $ParaView_LIB_DIR"
- echo " ParaView_INCLUDE_DIR : $ParaView_INCLUDE_DIR"
- echo " PV_PLUGIN_PATH : $PV_PLUGIN_PATH"
- fi
-
- # Add in python libraries if required
- paraviewPython=$ParaView_DIR/Utilities/VTKPythonWrapping
- if [ -r $paraviewPython ]
- then
- if [ "$PYTHONPATH" ]
- then
- export PYTHONPATH=$PYTHONPATH:$paraviewPython:$ParaView_LIB_DIR
- else
- export PYTHONPATH=$paraviewPython:$ParaView_LIB_DIR
- fi
- fi
-
- # Alias paraview to launch with mesa if necessary
- if [ "$ParaView_GL" = mesa ]
- then
- alias paraview='LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$ParaView_LIB_DIR/mesa paraview'
- fi
-else
- unset PV_PLUGIN_PATH
+if [ "$FOAM_VERBOSE" -a "$PS1" ]
+then
+ echo "Using paraview"
+ echo " ParaView_DIR : $ParaView_DIR"
+ echo " ParaView_LIB_DIR : $ParaView_LIB_DIR"
+ echo " ParaView_INCLUDE_DIR : $ParaView_INCLUDE_DIR"
+ echo " PV_PLUGIN_PATH : $PV_PLUGIN_PATH"
fi
-unset _foamParaviewEval
-unset cleaned cmake paraviewInstDir paraviewPython
-
#------------------------------------------------------------------------------
--
2.38.1
From 5d21c7dd6a8d7c136cd27d2fc3a6d9705adb9f61 Mon Sep 17 00:00:00 2001
From: Reza Housseini <reza.housseini@gmail.com>
Date: Tue, 20 Dec 2022 12:17:17 +0100
Subject: [PATCH 11/13] fix: add expand flag for foamDictionary call
---
bin/tools/RunFunctions | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/bin/tools/RunFunctions b/bin/tools/RunFunctions
index 1a040df6a..fc2af43be 100644
--- a/bin/tools/RunFunctions
+++ b/bin/tools/RunFunctions
@@ -41,12 +41,12 @@ isTest()
getNumberOfProcessors()
{
- foamDictionary -entry numberOfSubdomains -value system/decomposeParDict
+ foamDictionary -entry numberOfSubdomains -value -expand system/decomposeParDict
}
getApplication()
{
- foamDictionary -entry application -value system/controlDict
+ foamDictionary -entry application -value -expand system/controlDict
}
runApplication()
--
2.38.1
From b85c08f749a4ceb1764d988b5b9d8c007e878358 Mon Sep 17 00:00:00 2001
From: Reza Housseini <reza.housseini@gmail.com>
Date: Sat, 24 Dec 2022 12:53:20 +0100
Subject: [PATCH 12/13] fix: wait for spawned child processes to finish
---
test/IO/fileHandler/Allrun | 2 ++
1 file changed, 2 insertions(+)
diff --git a/test/IO/fileHandler/Allrun b/test/IO/fileHandler/Allrun
index bab6a20cf..ff1a94e2c 100755
--- a/test/IO/fileHandler/Allrun
+++ b/test/IO/fileHandler/Allrun
@@ -93,5 +93,7 @@ mkdir -p machineB/fileHandler
-roots "(\"$d/machineA\" \"$d/machineB\" \"$d/machineB\")"
)
+# wait for child processes to finish
+wait
#------------------------------------------------------------------------------
--
2.38.1
From 79c2db679e3316a30e94ba219761d3a3a2fc7f00 Mon Sep 17 00:00:00 2001
From: Reza Housseini <reza.housseini@gmail.com>
Date: Sat, 24 Dec 2022 22:39:33 +0100
Subject: [PATCH 13/13] test: make tests more verbose
---
tutorials/Allrun | 3 +++
1 file changed, 3 insertions(+)
diff --git a/tutorials/Allrun b/tutorials/Allrun
index 8bd667576..17bf2c111 100755
--- a/tutorials/Allrun
+++ b/tutorials/Allrun
@@ -88,6 +88,9 @@ logReportDir()
for log in `echo $logs | xargs ls -rt`
do
logReport $log >> ../testLoopReport || retVal=1
+ if [ "$retVal" -ne "0" ]; then
+ echo `cat $log`
+ fi
done
echo "" >> ../testLoopReport
--
2.38.1
|