all messages for Guix-related lists mirrored at yhetil.org
 help / color / mirror / code / Atom feed
From: Sarah Morgensen <iskarian@mgsn.dev>
To: 49729@debbugs.gnu.org
Subject: [bug#49729] [PATCH core-updates 02/20] gnu: clipper: Remove obsolete phase.
Date: Mon, 26 Jul 2021 19:56:31 -0700	[thread overview]
Message-ID: <43b263936417b9e8ae2725e35c69f9168432c24a.1627351168.git.iskarian@mgsn.dev> (raw)
In-Reply-To: <cover.1627351168.git.iskarian@mgsn.dev>

* gnu/packages/bioinformatics.scm (clipper)[arguments]<#:phases>: Remove
'make-files-writable phase.
---
 gnu/packages/bioinformatics.scm | 11 -----------
 1 file changed, 11 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index aa9a1328f0..f027da3ce7 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2303,17 +2303,6 @@ databases.")
                (base32
                 "1bcag4lb5bkzsj2vg7lrq24aw6yfgq275ifrbhd82l7kqgbbjbkv"))))
     (build-system python-build-system)
-    (arguments
-     `(#:phases
-       (modify-phases %standard-phases
-         (add-before 'reset-gzip-timestamps 'make-files-writable
-           (lambda* (#:key outputs #:allow-other-keys)
-             ;; Make sure .gz files are writable so that the
-             ;; 'reset-gzip-timestamps' phase can do its work.
-             (let ((out (assoc-ref outputs "out")))
-               (for-each make-file-writable
-                         (find-files out "\\.gz$"))
-               #t))))))
     (inputs
      `(("htseq" ,htseq)
        ("python-pybedtools" ,python-pybedtools)
-- 
2.31.1





  parent reply	other threads:[~2021-07-27  2:57 UTC|newest]

Thread overview: 29+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2021-07-25  6:12 [bug#49729] [PATCH core-updates] build-system/gnu: Make gzip files writable before resetting timestamps Sarah Morgensen
2021-07-25 15:26 ` Maxime Devos
2021-07-25 20:45   ` Sarah Morgensen
2021-07-26 20:49     ` Maxime Devos
2021-07-28  1:21       ` Sarah Morgensen
2021-07-27  2:16 ` [bug#49729] [PATCH core-updates 00/20] Remove obsolete phases making gzip files writable Sarah Morgensen
2021-07-27  2:56   ` [bug#49729] [PATCH core-updates 01/20] gnu: python-biom-format: Remove obsolete phase Sarah Morgensen
2021-07-27  2:56   ` Sarah Morgensen [this message]
2021-07-27  2:56   ` [bug#49729] [PATCH core-updates 03/20] gnu: khmer: " Sarah Morgensen
2021-07-27  2:56   ` [bug#49729] [PATCH core-updates 04/20] gnu: cups-minimal: " Sarah Morgensen
2021-07-27  2:56   ` [bug#49729] [PATCH core-updates 05/20] gnu: emacs: " Sarah Morgensen
2021-07-27  2:56   ` [bug#49729] [PATCH core-updates 06/20] gnu: po4a: " Sarah Morgensen
2021-07-27  2:56   ` [bug#49729] [PATCH core-updates 07/20] gnu: go-golang-org-x-crypto: " Sarah Morgensen
2021-07-27  2:56   ` [bug#49729] [PATCH core-updates 08/20] gnu: go-github-com-docker-distribution: " Sarah Morgensen
2021-07-27  2:56   ` [bug#49729] [PATCH core-updates 09/20] gnu: go-github-com-gdamore-tcell: " Sarah Morgensen
2021-07-27  2:56   ` [bug#49729] [PATCH core-updates 10/20] gnu: python-plotly: " Sarah Morgensen
2021-07-27  2:56   ` [bug#49729] [PATCH core-updates 11/20] gnu: go-ipfs: " Sarah Morgensen
2021-07-27  2:56   ` [bug#49729] [PATCH core-updates 12/20] gnu: python-scikit-learn: " Sarah Morgensen
2021-07-27  2:56   ` [bug#49729] [PATCH core-updates 13/20] gnu: jalv-select: " Sarah Morgensen
2021-07-27  2:56   ` [bug#49729] [PATCH core-updates 14/20] gnu: lmms: " Sarah Morgensen
2021-07-27  2:56   ` [bug#49729] [PATCH core-updates 15/20] gnu: helm: " Sarah Morgensen
2021-07-27  2:56   ` [bug#49729] [PATCH core-updates 16/20] gnu: arcanist: " Sarah Morgensen
2021-07-27  2:56   ` [bug#49729] [PATCH core-updates 17/20] gnu: python-pdfminer-six: " Sarah Morgensen
2021-07-27  2:56   ` [bug#49729] [PATCH core-updates 18/20] gnu: go-github-com-prometheus-common: " Sarah Morgensen
2021-07-27  2:56   ` [bug#49729] [PATCH core-updates 19/20] gnu: pre-commit: " Sarah Morgensen
2021-07-27 19:26   ` [bug#49729] [PATCH core-updates 20/20] gnu: cpuid: Remove obsolete file permissions change Sarah Morgensen
2021-10-26 13:14 ` [bug#49729] (No Subject) Attila Lendvai
2021-12-24  5:51   ` [bug#49729] [PATCH core-updates] build-system/gnu: Make gzip files writable before resetting timestamps Maxim Cournoyer
2022-01-17 17:09     ` Maxim Cournoyer

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=43b263936417b9e8ae2725e35c69f9168432c24a.1627351168.git.iskarian@mgsn.dev \
    --to=iskarian@mgsn.dev \
    --cc=49729@debbugs.gnu.org \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body.
Code repositories for project(s) associated with this external index

	https://git.savannah.gnu.org/cgit/guix.git

This is an external index of several public inboxes,
see mirroring instructions on how to clone and mirror
all data and code used by this external index.