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From: Romain GARBAGE <romain.garbage@inria.fr>
To: 69729@debbugs.gnu.org
Cc: Romain GARBAGE <romain.garbage@inria.fr>
Subject: [bug#69729] [PATCH 30/41] gnu: proteinortho: Remove dependency on lapack.
Date: Mon, 11 Mar 2024 12:07:11 +0100	[thread overview]
Message-ID: <20240311110750.16327-31-romain.garbage@inria.fr> (raw)
In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr>

* gnu/packages/bioinformatics.scm (proteinortho): Remove dependency on lapack.
---
 gnu/packages/bioinformatics.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ac2f7c1ade..98bc05d154 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8673,7 +8673,9 @@ (define-public proteinortho
              (substitute* "Makefile"
                (("INSTALLDIR=.*")
                 (string-append
-                 "INSTALLDIR=" (assoc-ref outputs "out") "/bin\n")))
+                 "INSTALLDIR=" (assoc-ref outputs "out") "/bin\n"))
+               (("-llapack -lblas")
+                "-lopenblas"))
              #t))
          (add-before 'install 'make-install-directory
            ;; The install directory is not created during 'make install'.
@@ -8697,7 +8699,6 @@ (define-public proteinortho
        ("perl" ,perl)
        ("python" ,python-wrapper)
        ("blast+" ,blast+)
-       ("lapack" ,lapack)
        ("openblas" ,openblas)))
     (native-inputs
      (list which))
-- 
2.41.0





  parent reply	other threads:[~2024-03-11 11:11 UTC|newest]

Thread overview: 45+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2024-03-11 11:01 [bug#69729] [PATCH 00/41] Improve performance in lapack dependent packages Romain GARBAGE
2024-03-11 11:06 ` [bug#69729] [PATCH 01/41] gnu: arpack-ng: Switch to openblas Romain GARBAGE
2024-03-11 11:06   ` [bug#69729] [PATCH 02/41] gnu: armadillo: " Romain GARBAGE
2024-03-11 11:06   ` [bug#69729] [PATCH 03/41] gnu: octave-cli: " Romain GARBAGE
2024-03-11 11:06   ` [bug#69729] [PATCH 04/41] gnu: scalapack: " Romain GARBAGE
2024-03-11 11:06   ` [bug#69729] [PATCH 05/41] gnu: hypre: " Romain GARBAGE
2024-03-11 11:06   ` [bug#69729] [PATCH 06/41] gnu: igraph: " Romain GARBAGE
2024-03-11 11:06   ` [bug#69729] [PATCH 07/41] gnu: vosk-api: Remove dependency on lapack Romain GARBAGE
2024-03-11 11:06   ` [bug#69729] [PATCH 08/41] gnu: jags: Switch to openblas Romain GARBAGE
2024-03-11 11:06   ` [bug#69729] [PATCH 09/41] gnu: sbcl-lla: " Romain GARBAGE
2024-03-11 11:06   ` [bug#69729] [PATCH 10/41] gnu: itpp: " Romain GARBAGE
2024-03-11 11:06   ` [bug#69729] [PATCH 11/41] gnu: gmsh: " Romain GARBAGE
2024-03-11 11:06   ` [bug#69729] [PATCH 12/41] gnu: ghc-hmatrix: " Romain GARBAGE
2024-03-11 11:06   ` [bug#69729] [PATCH 13/41] gnu: fenics-dolfin: Remove dependency on lapack Romain GARBAGE
2024-03-11 11:06   ` [bug#69729] [PATCH 14/41] gnu: ipopt: Switch to openblas Romain GARBAGE
2024-03-11 11:06   ` [bug#69729] [PATCH 15/41] gnu: ceres: Remove dependency on lapack Romain GARBAGE
2024-03-11 11:06   ` [bug#69729] [PATCH 16/41] gnu: sundials-julia: Switch to openblas Romain GARBAGE
2024-03-11 11:06   ` [bug#69729] [PATCH 17/41] gnu: plink: " Romain GARBAGE
2024-03-11 11:06   ` [bug#69729] [PATCH 18/41] gnu: p4est: Remove dependency on lapack Romain GARBAGE
2024-03-11 11:07   ` [bug#69729] [PATCH 19/41] gnu: plink-ng: Remove lapack dep Romain GARBAGE
2024-03-11 11:07   ` [bug#69729] [PATCH 20/41] gnu: dealii: Remove dependency on lapack Romain GARBAGE
2024-03-11 11:07   ` [bug#69729] [PATCH 21/41] gnu: elemental: " Romain GARBAGE
2024-03-11 11:07   ` [bug#69729] [PATCH 22/41] gnu: superlu-dist: " Romain GARBAGE
2024-03-11 11:07   ` [bug#69729] [PATCH 23/41] gnu: bonmin: Switch to openblas Romain GARBAGE
2024-03-11 11:07   ` [bug#69729] [PATCH 24/41] gnu: mpb: " Romain GARBAGE
2024-03-11 11:07   ` [bug#69729] [PATCH 25/41] gnu: meep: " Romain GARBAGE
2024-03-11 11:07   ` [bug#69729] [PATCH 26/41] gnu: casacore: Remove dependency on lapack Romain GARBAGE
2024-03-11 11:07   ` [bug#69729] [PATCH 27/41] gnu: aoflagger: " Romain GARBAGE
2024-03-11 11:07   ` [bug#69729] [PATCH 28/41] gnu: apl: Switch to openblas Romain GARBAGE
2024-03-11 11:07   ` [bug#69729] [PATCH 29/41] gnu: eigensoft: Remove dependency on lapack Romain GARBAGE
2024-03-11 11:07   ` Romain GARBAGE [this message]
2024-03-11 11:07   ` [bug#69729] [PATCH 31/41] gnu: scilab: " Romain GARBAGE
2024-03-11 11:07   ` [bug#69729] [PATCH 32/41] gnu: python-cvxopt: " Romain GARBAGE
2024-03-11 11:07   ` [bug#69729] [PATCH 33/41] gnu: dlib: " Romain GARBAGE
2024-03-11 11:07   ` [bug#69729] [PATCH 34/41] gnu: grass: " Romain GARBAGE
2024-03-11 11:07   ` [bug#69729] [PATCH 35/41] gnu: harminv: Switch to openblas Romain GARBAGE
2024-03-11 11:07   ` [bug#69729] [PATCH 36/41] gnu: giac: " Romain GARBAGE
2024-03-11 11:07   ` [bug#69729] [PATCH 37/41] gnu: libflame: " Romain GARBAGE
2024-03-11 11:07   ` [bug#69729] [PATCH 38/41] gnu: lush2: Remove dependency on lapack Romain GARBAGE
2024-03-11 11:07   ` [bug#69729] [PATCH 39/41] gnu: shogun: Switch to openblas Romain GARBAGE
2024-03-11 11:07   ` [bug#69729] [PATCH 40/41] gnu: kaldi-for-vosk: Remove dependency on lapack Romain GARBAGE
2024-03-11 11:07   ` [bug#69729] [PATCH 41/41] gnu: ocaml-lacaml: " Romain GARBAGE
2024-03-28 10:40 ` [bug#69729] [PATCH 00/41] Improve performance in lapack dependent packages Ludovic Courtès
2024-04-02 20:52   ` Christopher Baines
2024-04-04 15:17 ` bug#69729: " Ludovic Courtès

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