From: Vinicius Monego <monego@posteo.net>
To: 65096@debbugs.gnu.org
Cc: Vinicius Monego <monego@posteo.net>
Subject: [bug#65096] [PATCH 10/10] gnu: Add python-openturns.
Date: Sat, 5 Aug 2023 13:31:23 +0000 [thread overview]
Message-ID: <20230805133123.1128243-10-monego@posteo.net> (raw)
In-Reply-To: <20230805133123.1128243-1-monego@posteo.net>
* gnu/packages/statistics.scm (python-openturns): New variable.
---
gnu/packages/statistics.scm | 93 +++++++++++++++++++++++++++++++++++++
1 file changed, 93 insertions(+)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 2aecd5b8e3..8680d0e7be 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -43,6 +43,7 @@ (define-module (gnu packages statistics)
#:use-module (guix git-download)
#:use-module (guix utils)
#:use-module (guix build-system ant)
+ #:use-module (guix build-system cmake)
#:use-module (guix build-system emacs)
#:use-module (guix build-system gnu)
#:use-module (guix build-system r)
@@ -54,12 +55,15 @@ (define-module (gnu packages statistics)
#:use-module (gnu packages algebra)
#:use-module (gnu packages autotools)
#:use-module (gnu packages bash)
+ #:use-module (gnu packages bison)
+ #:use-module (gnu packages boost)
#:use-module (gnu packages check)
#:use-module (gnu packages compression)
#:use-module (gnu packages cran)
#:use-module (gnu packages curl)
#:use-module (gnu packages emacs)
#:use-module (gnu packages emacs-xyz)
+ #:use-module (gnu packages flex)
#:use-module (gnu packages fontutils)
#:use-module (gnu packages gcc)
#:use-module (gnu packages gtk)
@@ -90,6 +94,7 @@ (define-module (gnu packages statistics)
#:use-module (gnu packages sphinx)
#:use-module (gnu packages ssh)
#:use-module (gnu packages swig)
+ #:use-module (gnu packages tbb)
#:use-module (gnu packages tcl)
#:use-module (gnu packages tex)
#:use-module (gnu packages texinfo)
@@ -2342,6 +2347,94 @@ (define-public python-statsmodels
inference for statistical models.")
(license license:bsd-3)))
+(define-public python-openturns
+ (package
+ (name "python-openturns")
+ (version "1.21")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/openturns/openturns")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "05lbx8npvvk7jyakvfpgi9ggdp6cnzwv2hjmjrkji2s42axv0q6d"))))
+ (build-system cmake-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (delete 'check)
+ ;; This is a Python package which is fully managed by CMake. In
+ ;; cmake-build-system the check phase runs before install, but the
+ ;; Python modules required for testing are only installed in the
+ ;; install phase. Move check to after the install phase.
+ (add-after 'install 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (invoke "ctest" "--exclude-regex"
+ ;; XXX: Cpp tests fail in 'No such file or directory',
+ ;; skip for now and only run the Python tests.
+ ;; TODO: To pass the Python tests below, Ipopt must be
+ ;; built with MUMPS support, but simply adding mumps
+ ;; to the inputs doesn't work for it to be found,
+ ;; possibly because MUMPS doesn't generate a .pc file.
+ (string-join
+ (list "^cpp"
+ "pyinstallcheck_Bonmin_std"
+ "pyinstallcheck_Bonmin_4dsoo"
+ "pyinstallcheck_Bonmin_MIT15"
+ "pyinstallcheck_Bonmin_swiler2014"
+ "pyinstallcheck_Ipopt_std"
+ "pyinstallcheck_example_plot_optimization_bonmin"
+ "pyinstallcheck_coupling_tools")
+ "|"))))))))
+ (native-inputs
+ (list bison
+ dvisvgm
+ flex
+ python-numpydoc
+ python-sphinx
+ ;; python-sphinx-gallery ;; Currently broken
+ swig))
+ (inputs
+ (list openblas ; the only required dependency
+ ;; The dependecies below are all optional.
+ bonmin
+ boost
+ cbc ;; Maybe this should be propagated by Bonmin?
+ ceres
+ cminpack
+ dlib
+ hdf5
+ hmat
+ ipopt
+ libxml2
+ mpc
+ mpfr
+ nlopt
+ pagmo2
+ primesieve
+ python-wrapper
+ spectra
+ tbb))
+ (propagated-inputs
+ (list python-chaospy
+ python-dill
+ python-matplotlib
+ python-numpy
+ python-pandas
+ python-scipy))
+ (home-page "https://openturns.github.io/www/")
+ (synopsis "Uncertainty treatment library")
+ (description
+ "OpenTURNS is a scientific C++ and Python library including an internal
+data model and algorithms dedicated to the treatment of uncertainties. The
+main goal of this library is giving to specific applications all the
+functionalities needed to treat uncertainties in studies.")
+ (license license:lgpl3+)))
+
(define-public r-coda
(package
(name "r-coda")
--
2.34.1
next prev parent reply other threads:[~2023-08-05 13:33 UTC|newest]
Thread overview: 14+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-08-05 13:28 [bug#65096] [PATCH 00/10] And OpenTURNS and some math libraries Vinicius Monego
2023-08-05 13:31 ` [bug#65096] [PATCH 01/10] gnu: Add hmat Vinicius Monego
2023-08-05 13:31 ` [bug#65096] [PATCH 02/10] gnu: Add primesieve Vinicius Monego
2023-08-05 13:31 ` [bug#65096] [PATCH 03/10] gnu: Add cminpack Vinicius Monego
2023-08-05 13:31 ` [bug#65096] [PATCH 04/10] gnu: Add bonmin Vinicius Monego
2023-08-05 13:31 ` [bug#65096] [PATCH 05/10] gnu: Add pagmo2 Vinicius Monego
2023-08-05 13:31 ` [bug#65096] [PATCH 06/10] gnu: Add spectra Vinicius Monego
2023-08-05 13:31 ` [bug#65096] [PATCH 07/10] gnu: ceres: Propagate eigen and gflags Vinicius Monego
2023-08-05 13:31 ` [bug#65096] [PATCH 08/10] gnu: Add python-numpoly Vinicius Monego
2023-08-05 13:31 ` [bug#65096] [PATCH 09/10] gnu: Add python-chaospy Vinicius Monego
2023-08-05 13:31 ` Vinicius Monego [this message]
2023-09-05 14:25 ` [bug#65096] [PATCH 00/10] And OpenTURNS and some math libraries Maxim Cournoyer
2023-09-23 23:11 ` Vinicius Monego
2023-10-03 11:01 ` bug#65096: " Vinicius Monego
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