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From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: 63275@debbugs.gnu.org
Cc: rekado@elephly.net
Subject: [bug#63275] [PATCH] gnu: Add r-multibac.
Date: Thu, 4 May 2023 17:46:40 +0200	[thread overview]
Message-ID: <20230504154640.1833-1-madalinionel.patrascu@mdc-berlin.de> (raw)

* gnu/packages/bioconductor.scm (r-multibac): New variable.
---
 gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 768b55b25e..299d772bd2 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -10101,6 +10101,37 @@ (define-public r-mbkmeans
 large datasets, including support for on-disk data representation.")
     (license license:expat)))
 
+(define-public r-multibac
+  (package
+    (name "r-multibac")
+    (version "1.10.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "MultiBaC" version))
+       (sha256
+        (base32 "1qwf1mvw81hb929xpnx5x910f7qnax9lkylhwzcdw1814s4zj25i"))))
+    (properties `((upstream-name . "MultiBaC")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-ggplot2
+           r-matrix
+           r-multiassayexperiment
+           r-pcamethods
+           r-plotrix
+           r-ropls))
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/MultiBaC")
+    (synopsis "Multiomic batch effect correction")
+    (description
+     "MultiBaC is a strategy to correct batch effects from multiomic datasets
+distributed across different labs or data acquisition events.  This package is
+the first batch effect correction algorithm that dealing with batch effect
+correction in multiomics datasets.  MultiBaC is able to remove batch effects
+across different omics generated within separate batches provided that at least
+one common omic data type is included in all the batches considered.")
+    (license license:gpl3)))
+
 (define-public r-multtest
   (package
     (name "r-multtest")

base-commit: 7a0a186a32524d4156bf96786d708fab323cebff
-- 
2.39.2





             reply	other threads:[~2023-05-04 15:53 UTC|newest]

Thread overview: 2+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2023-05-04 15:46 Mădălin Ionel Patrașcu [this message]
2023-05-08  9:15 ` bug#63275: [PATCH] gnu: Add r-multibac Ricardo Wurmus

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