From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <61891@debbugs.gnu.org>
Subject: [bug#61891]
Date: Wed, 1 Mar 2023 08:23:41 +0100 [thread overview]
Message-ID: <20230301072343.708693-5-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <20230301072343.708693-1-madalinionel.patrascu@mdc-berlin.de>
Date: Thu, 23 Feb 2023 01:35:43 +0100
Subject: [PATCH 5/7] gnu: Add r-metagenomeseq.
* gnu/packages/bioconductor.scm (r-metagenomeseq): New variable.
---
gnu/packages/bioconductor.scm | 33 +++++++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 4b5ec7db28..7de5750e09 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6644,6 +6644,39 @@ (define-public r-maser
and visualizaton of alternative splicing events generated by rMATS.")
(license license:expat)))
+(define-public r-metagenomeseq
+ (package
+ (name "r-metagenomeseq")
+ (version "1.40.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "metagenomeSeq" version))
+ (sha256
+ (base32 "01wjw4kcm8ysa5sn3cqg4a9i5pyksnwmbdqp5fr6n2l9hllkc9jy"))))
+ (properties `((upstream-name . "metagenomeSeq")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biobase
+ r-foreach
+ r-glmnet
+ r-gplots
+ r-limma
+ r-matrix
+ r-matrixstats
+ r-rcolorbrewer
+ r-wrench))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/HCBravoLab/metagenomeSeq")
+ (synopsis "Statistical analysis for sparse high-throughput sequencing")
+ (description
+ "MetagenomeSeq is designed to determine features (be it @acronym{OTU, Operational
+Taxanomic Unit}, species, etc.) that are differentially abundant between two or
+more groups of multiple samples. This package is designed to address the effects
+of both normalization and under-sampling of microbial communities on disease
+association detection and the testing of feature correlations.")
+ (license license:artistic2.0)))
+
(define-public r-metaneighbor
(package
(name "r-metaneighbor")
--
2.39.1
next prev parent reply other threads:[~2023-03-01 7:26 UTC|newest]
Thread overview: 10+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-03-01 7:20 [bug#61891] [PATCH] gnu: Add r-biglm, r-cplm, r-som, r-chemometrics, r-metagenomeseq, r-maaslin2, r-mmuphin Mădălin Ionel Patrașcu
2023-03-01 7:23 ` [bug#61891] [PATCH 1/7] gnu: Add r-biglm Mădălin Ionel Patrașcu
2023-03-01 7:23 ` [bug#61891] [PATCH 2/7] gnu: Add r-cplm Mădălin Ionel Patrașcu
2023-03-01 7:23 ` [bug#61891] Mădălin Ionel Patrașcu
2023-03-01 7:23 ` [bug#61891] Mădălin Ionel Patrașcu
2023-03-01 7:23 ` Mădălin Ionel Patrașcu [this message]
2023-03-01 7:23 ` [bug#61891] Mădălin Ionel Patrașcu
2023-03-01 7:23 ` [bug#61891] Mădălin Ionel Patrașcu
2023-03-01 10:53 ` [bug#61891] Mădălin Ionel Patrașcu
2023-03-02 21:09 ` bug#61891: Ricardo Wurmus
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