From: Simon Tournier <zimon.toutoune@gmail.com>
To: 60885@debbugs.gnu.org
Cc: Simon Tournier <zimon.toutoune@gmail.com>
Subject: [bug#60885] [PATCH 1/4] gnu: Add python-vireosnp.
Date: Tue, 17 Jan 2023 18:30:38 +0100 [thread overview]
Message-ID: <20230117173041.1851206-1-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20230117172650.1849207-1-zimon.toutoune@gmail.com>
* gnu/packages/bioinformatics.scm (python-vireosnp): New variable.
---
gnu/packages/bioinformatics.scm | 22 ++++++++++++++++++++++
1 file changed, 22 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index e60dffc21e..5fc2d18690 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -17604,6 +17604,28 @@ (define-public r-kbet
;; Any version of the GPL
(license license:gpl3+))))
+(define-public python-vireosnp
+ (package
+ (name "python-vireosnp")
+ (version "0.5.7")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "vireoSNP" version))
+ (sha256
+ (base32
+ "02ybhzivsxwnb1axlgbs63wni1j27xajnkl4jw1ps5vmsz2l4b0d"))))
+ (build-system python-build-system)
+ (propagated-inputs (list python-matplotlib python-numpy python-scipy))
+ (home-page "https://github.com/huangyh09/vireoSNP")
+ (synopsis "Deconvolution based on SNP for multiplexed scRNA-seq data")
+ (description
+ "This package provides a deconvolution based on Single Nucleotide
+Position (SNP) for multiplexed scRNA-seq data. The name vireo stand for
+Variational Inference for Reconstructing Ensemble Origin by expressed SNPs in
+multiplexed scRNA-seq data and follows the clone identification from
+single-cell data named @url{https://github.com/PMBio/cardelino, cardelino}.")
+ (license license:asl2.0)))
+
(define-public ccwl
(package
(name "ccwl")
--
2.38.1
next prev parent reply other threads:[~2023-01-17 17:31 UTC|newest]
Thread overview: 6+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-01-17 17:26 [bug#60885] [PATCH 0/4] Some bioinfo packages Simon Tournier
2023-01-17 17:30 ` Simon Tournier [this message]
2023-01-17 17:30 ` [bug#60885] [PATCH 2/4] gnu: Add r-scistreer Simon Tournier
2023-01-17 17:30 ` [bug#60885] [PATCH 3/4] gnu: Add r-roptim Simon Tournier
2023-01-17 17:30 ` [bug#60885] [PATCH 4/4] gnu: Add r-numbat Simon Tournier
2023-01-20 9:56 ` bug#60885: [PATCH 0/4] Some bioinfo packages Ricardo Wurmus
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