From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <60877@debbugs.gnu.org>
Cc: rekado@elephly.net
Subject: [bug#60877] [PATCH 4/4] gnu: Add r-alpsnmr.
Date: Tue, 17 Jan 2023 13:25:38 +0100 [thread overview]
Message-ID: <20230117122538.41537-4-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <20230117122538.41537-1-madalinionel.patrascu@mdc-berlin.de>
* gnu/packages/bioconductor.scm (r-alpsnmr): New variable.
---
gnu/packages/bioconductor.scm | 53 +++++++++++++++++++++++++++++++++++
1 file changed, 53 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 7498c3a767..118f218f4b 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2598,6 +2598,59 @@ (define-public r-alpine
data.")
(license license:gpl2+)))
+(define-public r-alpsnmr
+ (package
+ (name "r-alpsnmr")
+ (version "4.0.2")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AlpsNMR" version))
+ (sha256
+ (base32
+ "1y4qqc6l8flv5ns4qwzjwmcykm6zcm4jg097mn8xyp7mnxymy7pl"))))
+ (properties `((upstream-name . "AlpsNMR")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-baseline
+ r-biocparallel
+ r-dplyr
+ r-fs
+ r-future
+ r-generics
+ r-ggplot2
+ r-glue
+ r-htmltools
+ r-magrittr
+ r-matrixstats
+ r-mixomics
+ r-pcapp
+ r-purrr
+ r-readxl
+ r-reshape2
+ r-rlang
+ r-rmarkdown
+ r-scales
+ r-signal
+ r-speaq
+ r-stringr
+ r-tibble
+ r-tidyr
+ r-tidyselect
+ r-vctrs))
+ (native-inputs (list r-knitr))
+ (home-page "https://sipss.github.io/AlpsNMR/")
+ (synopsis "Automated spectral processing system for NMR")
+ (description
+ "This package reads Bruker @acronym{NMR, Nuclear Magnetic Resonance} data
+directories both zipped and unzipped. It provides automated and efficient signal
+processing for untargeted NMR metabolomics. It is able to interpolate the samples,
+detect outliers, exclude regions, normalize, detect peaks, align the spectra,
+integrate peaks, manage metadata and visualize the spectra. After spectra
+proccessing, it can apply multivariate analysis on extracted data. Efficient
+plotting with 1-D data is also available. Basic reading of 1D ACD/Labs exported
+JDX samples is also available.")
+ (license license:expat)))
+
(define-public r-altcdfenvs
(package
(name "r-altcdfenvs")
--
2.38.1
next prev parent reply other threads:[~2023-01-17 12:42 UTC|newest]
Thread overview: 6+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-01-17 12:22 [bug#60877] [PATCH] gnu: Add r-baseline, r-missforest, r-speaq and r-alpsnmr MadalinIonel.Patrascu
2023-01-17 12:25 ` [bug#60877] [PATCH 1/4] gnu: Add r-baseline Mădălin Ionel Patrașcu
2023-01-17 12:25 ` [bug#60877] [PATCH 2/4] gnu: Add r-missforest Mădălin Ionel Patrașcu
2023-01-17 12:25 ` [bug#60877] [PATCH 3/4] gnu: Add r-speaq Mădălin Ionel Patrașcu
2023-01-17 12:25 ` Mădălin Ionel Patrașcu [this message]
2023-01-22 8:09 ` bug#60877: [PATCH 1/4] gnu: Add r-baseline Ricardo Wurmus
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