all messages for Guix-related lists mirrored at yhetil.org
 help / color / mirror / code / Atom feed
From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <59835@debbugs.gnu.org>
Cc: rekado@elephly.net
Subject: [bug#59835] [PATCH 1/3] gnu: Add r-makecdfenv.
Date: Mon, 5 Dec 2022 16:21:51 +0100	[thread overview]
Message-ID: <20221205152153.18545-1-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <7734e3c0299847c9a5c367e2bcf77a6a@mdc-berlin.de>

* gnu/packages/bioconductor.scm (r-makecdfenv): New variable.
---
 gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c62c5970b8..7cace3317c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6010,6 +6010,33 @@ (define-public r-made4
 datasets (coinertia analysis).")
     (license license:artistic2.0)))
 
+(define-public r-makecdfenv
+  (package
+    (name "r-makecdfenv")
+    (version "1.74.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "makecdfenv" version))
+              (sha256
+               (base32
+                "0bvj5dg6yfjnhga1z8788zmb98d8shyz8pzz0ggnml87c1p2gy25"))))
+    (properties `((upstream-name . "makecdfenv")))
+    (build-system r-build-system)
+    (inputs (list zlib))
+    (propagated-inputs
+     (list r-affy
+           r-affyio
+           r-biobase
+           r-zlibbioc))
+    (home-page "https://bioconductor.org/packages/makecdfenv")
+    (synopsis "Chip description file environment maker")
+    (description
+     "This package implements two functions.  One of them reads an @code{Affymetrix}
+@acronym{CDF, chip description file} and creates a hash table environment containing
+the location/probe set membership mapping.  The other one creates a package that
+automatically loads that environment.")
+    (license license:gpl2+)))
+
 (define-public r-metaneighbor
   (package
     (name "r-metaneighbor")

base-commit: b2a848d23d37f31496e1ff664f1dcf6abcdcc388
-- 
2.38.1





  reply	other threads:[~2022-12-05 15:24 UTC|newest]

Thread overview: 5+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2022-12-05 15:18 [bug#59835] [PATCH] gnu: Add r-makecdfenv, r-altcdfenvs and r-harshlight MadalinIonel.Patrascu
2022-12-05 15:21 ` Mădălin Ionel Patrașcu [this message]
2022-12-05 15:21   ` [bug#59835] [PATCH 2/3] gnu: Add r-altcdfenvs Mădălin Ionel Patrașcu
2022-12-05 15:21   ` [bug#59835] [PATCH 3/3] gnu: Add r-harshlight Mădălin Ionel Patrașcu
2022-12-12 14:36   ` bug#59835: [PATCH 1/3] gnu: Add r-makecdfenv Ricardo Wurmus

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=20221205152153.18545-1-madalinionel.patrascu@mdc-berlin.de \
    --to=madalinionel.patrascu@mdc-berlin.de \
    --cc=59835@debbugs.gnu.org \
    --cc=rekado@elephly.net \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body.
Code repositories for project(s) associated with this external index

	https://git.savannah.gnu.org/cgit/guix.git

This is an external index of several public inboxes,
see mirroring instructions on how to clone and mirror
all data and code used by this external index.