From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <58879@debbugs.gnu.org>
Cc: rekado@elephly.net
Subject: [bug#58879] [PATCH 1/5] gnu: Add r-deco.
Date: Sun, 30 Oct 2022 01:16:04 +0200 [thread overview]
Message-ID: <20221029231608.13909-1-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <fdbfe6a8cf93421e8855d1844fa3856d@mdc-berlin.de>
* gnu/packages/bioconductor.scm (r-deco): New variable.
---
gnu/packages/bioconductor.scm | 42 +++++++++++++++++++++++++++++++++++
1 file changed, 42 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index b8535250f9..2f2268e5e6 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3075,6 +3075,48 @@ (define-public r-decipher
biological sequences.")
(license license:gpl3)))
+(define-public r-deco
+ (package
+ (name "r-deco")
+ (version "1.12.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "deco" version))
+ (sha256
+ (base32
+ "18n5zgln33c79jbjzjlivs8ihyg8zci6minfqlvagxgzcpa67k0m"))))
+ (properties `((upstream-name . "deco")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-ade4
+ r-annotationdbi
+ r-biobase
+ r-biocparallel
+ r-biocstyle
+ r-cluster
+ r-foreign
+ r-gdata
+ r-ggplot2
+ r-gplots
+ r-gridextra
+ r-limma
+ r-locfit
+ r-made4
+ r-rcolorbrewer
+ r-reshape2
+ r-scatterplot3d
+ r-sfsmisc
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/fjcamlab/deco")
+ (synopsis "Decomposing heterogeneous cohorts using omic data profiling")
+ (description
+ "The package discovers differential features in hetero- and homogeneous omic
+data by a two-step method including subsampling @code{LIMMA} and @code{NSCA}.
+@code{DECO} reveals feature associations to hidden subclasses not exclusively
+related to higher deregulation levels.")
+ (license (license:fsdg-compatible "GPL (>=3)"))))
+
(define-public r-deconvr
(package
(name "r-deconvr")
base-commit: ac51b9c86d58cfdb13ee643a2fdc8e979939a260
--
2.38.0
next prev parent reply other threads:[~2022-10-29 23:17 UTC|newest]
Thread overview: 7+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-10-29 23:09 [bug#58879] [PATCH] gnu: Add r-deco, r-decomplexdisease, r-decomptumor2sig, r-deconrnaseq and r-decontam MadalinIonel.Patrascu
2022-10-29 23:16 ` Mădălin Ionel Patrașcu [this message]
2022-10-29 23:16 ` [bug#58879] [PATCH 2/5] gnu: Add r-decomplexdisease Mădălin Ionel Patrașcu
2022-10-29 23:16 ` [bug#58879] [PATCH 3/5] gnu: Add r-decomptumor2sig Mădălin Ionel Patrașcu
2022-10-29 23:16 ` [bug#58879] [PATCH 4/5] gnu: Add r-deconrnaseq Mădălin Ionel Patrașcu
2022-10-29 23:16 ` [bug#58879] [PATCH 5/5] gnu: Add r-decontam Mădălin Ionel Patrașcu
2022-10-31 19:06 ` bug#58879: [PATCH 1/5] gnu: Add r-deco Ricardo Wurmus
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