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From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: 55218@debbugs.gnu.org
Cc: rekado@elephly.net
Subject: [bug#55218] [PATCH] gnu: Add r-agimicrorna.
Date: Mon, 2 May 2022 11:37:34 +0200	[thread overview]
Message-ID: <20220502093734.30444-1-madalinionel.patrascu@mdc-berlin.de> (raw)

* gnu/packages/bioconductor.scm (r-agimicrorna): New variable.
---
 gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a78903becc..78075de4e0 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1877,6 +1877,36 @@ (define-public r-agilp
     ;; GPLv3.
     (license license:gpl3)))
 
+(define-public r-agimicrorna
+  (package
+    (name "r-agimicrorna")
+    (version "2.46.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "AgiMicroRna" version))
+              (sha256
+               (base32
+                "0jic89gyphbv7jzlfgm9bh1aq48lp86rq6hr34gsg9z0pa1192xa"))))
+    (properties `((upstream-name . "AgiMicroRna")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-affy
+           r-affycoretools
+           r-biobase
+           r-limma
+           r-preprocesscore))
+    (home-page "https://git.bioconductor.org/packages/AgiMicroRna")
+    (synopsis
+     "Processing and differential expression analysis of Agilent microRNA chips")
+    (description
+     "@code{AgiMicroRna} provides useful functionality for the processing, quality
+assessment and differential expression analysis of Agilent microRNA array data.
+The package uses a limma-like structure to generate the processed data in order
+to make statistical inferences about differential expression using the linear
+model features implemented in limma.  Standard Bioconductor objects are used so
+that other packages could be used as well.")
+    (license license:gpl3)))
+
 (define-public r-aneufinder
   (package
     (name "r-aneufinder")

base-commit: 098f2eea331121905e3c867f478b22cea3510841
-- 
2.36.0





             reply	other threads:[~2022-05-02  9:40 UTC|newest]

Thread overview: 2+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2022-05-02  9:37 Mădălin Ionel Patrașcu [this message]
2022-05-02 14:54 ` bug#55218: [PATCH] gnu: Add r-agimicrorna Ricardo Wurmus

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