From: Arun Isaac <arunisaac@systemreboot.net>
To: 55125@debbugs.gnu.org
Cc: Arun Isaac <arunisaac@systemreboot.net>
Subject: [bug#55125] [PATCH 2/9] gnu: tabixpp: Use #:make-flags.
Date: Tue, 26 Apr 2022 18:16:32 +0530 [thread overview]
Message-ID: <20220426124639.17159-2-arunisaac@systemreboot.net> (raw)
In-Reply-To: <20220426124639.17159-1-arunisaac@systemreboot.net>
* gnu/packages/bioinformatics.scm (tabixpp)[arguments]: Do not override the
build phase. Move the required make arguments to #:make-flags. Add
build-libraries phase.
---
gnu/packages/bioinformatics.scm | 16 ++++++++--------
1 file changed, 8 insertions(+), 8 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 774da809d8..6c24c1c26f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14279,18 +14279,18 @@ (define-public tabixpp
(inputs
(list htslib zlib))
(arguments
- (list #:tests? #f ; There are no tests to run.
+ (list #:make-flags #~(list "HTS_HEADERS="
+ (string-append "HTS_LIB="
+ (search-input-file %build-inputs
+ "/lib/libhts.a"))
+ "INCLUDES=")
+ #:tests? #f ; There are no tests to run.
#:phases
#~(modify-phases %standard-phases
(delete 'configure) ; There is no configure phase.
- ;; The build phase needs overriding the location of htslib.
- (replace 'build
+ ;; Build shared and static libraries.
+ (add-after 'build 'build-libraries
(lambda* (#:key inputs #:allow-other-keys)
- (invoke "make"
- (string-append "HTS_LIB=" (search-input-file inputs "/lib/libhts.a"))
- (string-append "INCLUDES= -I" (search-input-directory inputs "/include/htslib"))
- "HTS_HEADERS=" ; No need to check for headers here.
- (string-append "LIBPATH=-L. -L" (search-input-directory inputs "/include")))
(invoke "g++" "-shared" "-o" "libtabixpp.so" "tabix.o" "-lhts")
(invoke "ar" "rcs" "libtabixpp.a" "tabix.o")))
(replace 'install
--
2.35.1
next prev parent reply other threads:[~2022-04-26 12:48 UTC|newest]
Thread overview: 13+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-04-26 12:44 [bug#55125] [PATCH 0/9] Cross-compile vcflib for RISC-V Arun Isaac
2022-04-26 12:46 ` [bug#55125] [PATCH 1/9] gnu: tabixpp: Use G-expressions Arun Isaac
2022-04-26 12:46 ` Arun Isaac [this message]
2022-04-26 12:46 ` [bug#55125] [PATCH 3/9] gnu: tabixpp: Use build tools specific to the target Arun Isaac
2022-04-26 12:46 ` [bug#55125] [PATCH 4/9] gnu: tabixpp: Add bzip2 and xz to inputs Arun Isaac
2022-04-26 12:46 ` [bug#55125] [PATCH 5/9] gnu: fastahack: Use G-expressions Arun Isaac
2022-04-26 12:46 ` [bug#55125] [PATCH 6/9] gnu: fastahack: Use compiler specific to the build target Arun Isaac
2022-04-26 12:46 ` [bug#55125] [PATCH 7/9] gnu: vcflib: Use G-expressions Arun Isaac
2022-04-26 12:46 ` [bug#55125] [PATCH 8/9] gnu: vcflib: Find submodule sources in native-inputs during cross-compilation Arun Isaac
2022-04-26 12:46 ` [bug#55125] [PATCH 9/9] gnu: vcflib: Set absolute path to pkg-config Arun Isaac
2022-05-07 21:45 ` [bug#55125] [PATCH 0/9] Cross-compile vcflib for RISC-V Ludovic Courtès
2022-05-12 7:57 ` Arun Isaac
2022-05-09 8:31 ` bug#55125: " Efraim Flashner
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