From: Arun Isaac <arunisaac@systemreboot.net>
To: 52091@debbugs.gnu.org
Cc: Arun Isaac <arunisaac@systemreboot.net>
Subject: [bug#52091] [PATCH] gnu: Add ccwl.
Date: Thu, 25 Nov 2021 11:16:27 +0530 [thread overview]
Message-ID: <20211125054627.24135-1-arunisaac@systemreboot.net> (raw)
* gnu/packages/bioinformatics.scm (ccwl): New variable.
---
gnu/packages/bioinformatics.scm | 35 +++++++++++++++++++++++++++++++++
1 file changed, 35 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 67335daead..ec34ff0916 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -142,6 +142,7 @@ (define-module (gnu packages bioinformatics)
#:use-module (gnu packages ruby)
#:use-module (gnu packages serialization)
#:use-module (gnu packages shells)
+ #:use-module (gnu packages skribilo)
#:use-module (gnu packages sphinx)
#:use-module (gnu packages sqlite)
#:use-module (gnu packages statistics)
@@ -15886,3 +15887,37 @@ (define-public r-cytonorm
control samples and applying quantile normalization on all markers of
interest.")
(license license:gpl2+))))
+
+(define-public ccwl
+ (package
+ (name "ccwl")
+ (version "0.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://ccwl.systemreboot.net/releases/ccwl-"
+ version ".tar.lz"))
+ (sha256
+ (base32
+ "1ar8rfz3zrksgygrv67zv77y8gfvvz54zcs546jn6j28y20basla"))))
+ (build-system gnu-build-system)
+ (arguments
+ '(#:make-flags '("GUILE_AUTO_COMPILE=0"))) ; to prevent guild warnings
+ (inputs
+ `(("guile" ,guile-3.0)
+ ("guile-libyaml" ,guile-libyaml)))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)
+ ("lzip" ,lzip)
+ ;; To build documentation
+ ("cwltool" ,cwltool)
+ ("graphviz" ,graphviz)
+ ("skribilo" ,skribilo)))
+ (home-page "https://ccwl.systemreboot.net")
+ (synopsis "Concise common workflow language")
+ (description "The @acronym{ccwl, Concise Common Workflow Language} is a
+concise syntax to express CWL workflows. ccwl is a compiler to generate CWL
+workflows from concise descriptions in ccwl. It is implemented as an
+@acronym{EDSL, Embedded Domain Specific Language} in the Scheme programming
+language.")
+ (license license:gpl3+)))
--
2.34.0
next reply other threads:[~2021-11-25 5:47 UTC|newest]
Thread overview: 5+ messages / expand[flat|nested] mbox.gz Atom feed top
2021-11-25 5:46 Arun Isaac [this message]
2021-11-29 15:48 ` [bug#52091] [PATCH v2 0/1] Add ccwl Arun Isaac
2021-11-29 15:48 ` [bug#52091] [PATCH v2 1/1] gnu: " Arun Isaac
2021-12-09 15:30 ` [bug#52091] [PATCH] " Ludovic Courtès
2021-12-10 10:07 ` bug#52091: " Arun Isaac
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=20211125054627.24135-1-arunisaac@systemreboot.net \
--to=arunisaac@systemreboot.net \
--cc=52091@debbugs.gnu.org \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
Code repositories for project(s) associated with this external index
https://git.savannah.gnu.org/cgit/guix.git
This is an external index of several public inboxes,
see mirroring instructions on how to clone and mirror
all data and code used by this external index.