From: zimoun <zimon.toutoune@gmail.com>
To: 47156@debbugs.gnu.org
Cc: zimoun <zimon.toutoune@gmail.com>
Subject: [bug#47156] [PATCH 02/10] gnu: r-biocviews: Move to (gnu packages bioconductor).
Date: Mon, 15 Mar 2021 14:01:27 +0100 [thread overview]
Message-ID: <20210315130134.30302-2-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20210315130134.30302-1-zimon.toutoune@gmail.com>
* gnu/packages/bioinformatics.scm (r-biocviews): Move from here...
* gnu/packages/bioconductor.scm (r-biocviews): ...to here.
---
gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 28 ----------------------------
2 files changed, 28 insertions(+), 28 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 55f718d5ab..4761474b04 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8477,6 +8477,34 @@ monograph.")
different graph related packages produced by Bioconductor.")
(license license:artistic2.0)))
+(define-public r-biocviews
+ (package
+ (name "r-biocviews")
+ (version "1.58.1")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "biocViews" version))
+ (sha256
+ (base32
+ "1by2639z7n62z84dr8rj9jz12gsd1k8q42zsnxacxbwfwp6h0cl4"))))
+ (properties
+ `((upstream-name . "biocViews")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biocmanager" ,r-biocmanager)
+ ("r-graph" ,r-graph)
+ ("r-rbgl" ,r-rbgl)
+ ("r-rcurl" ,r-rcurl)
+ ("r-xml" ,r-xml)
+ ("r-runit" ,r-runit)))
+ (home-page "https://bioconductor.org/packages/biocViews")
+ (synopsis "Bioconductor package categorization helper")
+ (description "The purpose of biocViews is to create HTML pages that
+categorize packages in a Bioconductor package repository according to keywords,
+also known as views, in a controlled vocabulary.")
+ (license license:artistic2.0)))
+
(define-public r-experimenthub
(package
(name "r-experimenthub")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 20a9385604..cc6e40283b 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7691,34 +7691,6 @@ including VCF header and contents in RDF and JSON.")
(home-page "https://github.com/vcflib/bio-vcf")
(license license:expat)))
-(define-public r-biocviews
- (package
- (name "r-biocviews")
- (version "1.58.1")
- (source (origin
- (method url-fetch)
- (uri (bioconductor-uri "biocViews" version))
- (sha256
- (base32
- "1by2639z7n62z84dr8rj9jz12gsd1k8q42zsnxacxbwfwp6h0cl4"))))
- (properties
- `((upstream-name . "biocViews")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biobase" ,r-biobase)
- ("r-biocmanager" ,r-biocmanager)
- ("r-graph" ,r-graph)
- ("r-rbgl" ,r-rbgl)
- ("r-rcurl" ,r-rcurl)
- ("r-xml" ,r-xml)
- ("r-runit" ,r-runit)))
- (home-page "https://bioconductor.org/packages/biocViews")
- (synopsis "Bioconductor package categorization helper")
- (description "The purpose of biocViews is to create HTML pages that
-categorize packages in a Bioconductor package repository according to keywords,
-also known as views, in a controlled vocabulary.")
- (license license:artistic2.0)))
-
(define-public r-biocstyle
(package
(name "r-biocstyle")
--
2.30.1
next prev parent reply other threads:[~2021-03-15 13:02 UTC|newest]
Thread overview: 12+ messages / expand[flat|nested] mbox.gz Atom feed top
2021-03-15 12:58 [bug#47156] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor) zimoun
2021-03-15 13:01 ` [bug#47156] [PATCH 01/10] gnu: r-grohmm: Move " zimoun
2021-03-15 13:01 ` zimoun [this message]
2021-03-15 13:01 ` [bug#47156] [PATCH 03/10] gnu: r-biocstyle: " zimoun
2021-03-15 13:01 ` [bug#47156] [PATCH 04/10] gnu: r-bioccheck: " zimoun
2021-03-15 13:01 ` [bug#47156] [PATCH 05/10] gnu: r-s4vectors: " zimoun
2021-03-15 13:01 ` [bug#47156] [PATCH 06/10] gnu: r-iranges: " zimoun
2021-03-15 13:01 ` [bug#47156] [PATCH 07/10] gnu: r-genomeinfodbdata: " zimoun
2021-03-15 13:01 ` [bug#47156] [PATCH 08/10] gnu: r-genomeinfodb: " zimoun
2021-03-15 13:01 ` [bug#47156] [PATCH 09/10] gnu: r-edger: " zimoun
2021-03-15 13:01 ` [bug#47156] [PATCH 10/10] gnu: r-variantannotation: " zimoun
2021-03-15 13:09 ` bug#47156: [PATCH 00/10] Move some Bioconductor packages " Ricardo Wurmus
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