From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <46955@debbugs.gnu.org>
Cc: rekado@elephly.net,
"Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
Subject: [bug#46955] [PATCH 2/2] gnu: python-cooler: Update to 0.8.10.
Date: Sat, 6 Mar 2021 01:57:03 +0100 [thread overview]
Message-ID: <20210306005703.25479-2-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <20210306005703.25479-1-madalinionel.patrascu@mdc-berlin.de>
* gnu/packages/bioinformatics.scm (python-cooler): Update to 0.8.10/
---
gnu/packages/bioinformatics.scm | 21 ++++++++++++---------
1 file changed, 12 insertions(+), 9 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6d21e14360..bc31d50e54 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13636,35 +13636,38 @@ fasta subsequences.")
(define-public python-cooler
(package
(name "python-cooler")
- (version "0.8.7")
+ (version "0.8.10")
(source
(origin
(method url-fetch)
(uri (pypi-uri "cooler" version))
(sha256
(base32
- "01g6gqix9ba27sappz6nfyiwabzrlf8i5fn8kwcz8ra356cq9crp"))))
+ "1hi9anwz8b9p9wigzc5hypnwm6a4ikvlv69ixy3ki8939ngb1sj3"))))
(build-system python-build-system)
(propagated-inputs
`(("python-asciitree" ,python-asciitree)
- ("python-biopython" ,python-biopython)
("python-click" ,python-click)
("python-cytoolz" ,python-cytoolz)
- ("python-dask" ,python-dask)
("python-h5py" ,python-h5py)
("python-multiprocess" ,python-multiprocess)
("python-numpy" ,python-numpy)
("python-pandas" ,python-pandas)
("python-pyfaidx" ,python-pyfaidx)
("python-pypairix" ,python-pypairix)
- ("python-pysam" ,python-pysam)
("python-pyyaml" ,python-pyyaml)
("python-scipy" ,python-scipy)
- ("python-simplejson" ,python-simplejson)))
+ ("python-simplejson" ,python-simplejson)
+ ("python-six" ,python-six)))
(native-inputs
- `(("python-mock" ,python-mock)
- ("python-pytest" ,python-pytest)))
- (home-page "https://github.com/mirnylab/cooler")
+ `(("python-codecov" ,python-codecov)
+ ("python-dask" ,python-dask) ;;unittest.runner.TextTestResult
+ ("python-mock" ,python-mock)
+ ("python-pytest" ,python-pytest)
+ ("python-pytest-cov" ,python-pytest-cov)
+ ("python-pytest-flake8" ,python-pytest-flake8)
+ ("python-sparse" ,python-sparse))) ;;unittest.runner.TextTestResult
+ (home-page "https://github.com/open2c/cooler")
(synopsis "Sparse binary format for genomic interaction matrices")
(description
"Cooler is a support library for a sparse, compressed, binary persistent
--
2.30.1
next prev parent reply other threads:[~2021-03-06 0:58 UTC|newest]
Thread overview: 17+ messages / expand[flat|nested] mbox.gz Atom feed top
2021-03-06 0:54 [bug#46955] (no subject) Mădălin Ionel Patrașcu
2021-03-06 0:57 ` [bug#46955] [PATCH 1/2] gnu: Add python-sparse Mădălin Ionel Patrașcu
2021-03-06 0:57 ` Mădălin Ionel Patrașcu [this message]
2021-04-01 15:09 ` [bug#46955] [PATCH 2/2] gnu: python-cooler: Update to 0.8.10 Ricardo Wurmus
2021-04-01 15:07 ` [bug#46955] [PATCH 1/2] gnu: Add python-sparse Ricardo Wurmus
2021-04-01 15:10 ` Ricardo Wurmus
[not found] ` <handler.46955.B.16149920915786.ack@debbugs.gnu.org>
2021-06-03 23:23 ` [bug#46955] [ext] bug#46955: Acknowledgement ((no subject)) Mădălin Ionel Patrașcu
2021-06-03 23:25 ` [bug#46955] [PATCH 1/3] gnu: Add python-sparse Mădălin Ionel Patrașcu
2021-06-03 23:25 ` [bug#46955] [PATCH 2/3] gnu: Add python-ipytree Mădălin Ionel Patrașcu
2021-06-03 23:25 ` [bug#46955] [PATCH 3/3] gnu: python-cooler: Update to 0.8.11 Mădălin Ionel Patrașcu
2021-06-05 10:06 ` Maxime Devos
2021-06-06 0:03 ` [bug#46955] [ext] " Mădălin Ionel Patrașcu
2021-06-06 0:06 ` [bug#46955] [PATCH 1/3] gnu: Add python-sparse Mădălin Ionel Patrașcu
2021-06-06 0:06 ` [bug#46955] [PATCH 2/3] gnu: Add python-ipytree Mădălin Ionel Patrașcu
2021-06-06 6:23 ` Ricardo Wurmus
2021-06-06 0:06 ` [bug#46955] [PATCH 3/3] gnu: python-cooler: Update to 0.8.11 Mădălin Ionel Patrașcu
2021-06-06 6:36 ` bug#46955: " Ricardo Wurmus
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