From: zimoun <zimon.toutoune@gmail.com>
To: 43400@debbugs.gnu.org
Cc: zimoun <zimon.toutoune@gmail.com>
Subject: [bug#43400] [PATCH 10/12] gnu: r-hdf5array: Move to (gnu packages bioconductor).
Date: Mon, 14 Sep 2020 18:07:47 +0200 [thread overview]
Message-ID: <20200914160747.8983-12-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20200914160747.8983-1-zimon.toutoune@gmail.com>
* gnu/packages/bioinformatics.scm (r-hdf5array): Move from here...
* gnu/packages/bioconductor.scm (r-hdf5array): ...to here.
---
gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 30 ------------------------------
2 files changed, 30 insertions(+), 30 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0e63c486ee..b6a09c4ce4 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8337,6 +8337,36 @@ routines.")
objects from the @code{graph} package.")
(license license:epl1.0)))
+(define-public r-hdf5array
+ (package
+ (name "r-hdf5array")
+ (version "1.16.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "HDF5Array" version))
+ (sha256
+ (base32
+ "01767v90nl0499jcicpxngbbs0af5p9c5aasi5va01w3v5bnqddn"))))
+ (properties `((upstream-name . "HDF5Array")))
+ (build-system r-build-system)
+ (inputs
+ `(("zlib" ,zlib)))
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-delayedarray" ,r-delayedarray)
+ ("r-iranges" ,r-iranges)
+ ("r-matrix" ,r-matrix)
+ ("r-rhdf5" ,r-rhdf5)
+ ("r-rhdf5lib" ,r-rhdf5lib)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "https://bioconductor.org/packages/HDF5Array")
+ (synopsis "HDF5 back end for DelayedArray objects")
+ (description "This package provides an array-like container for convenient
+access and manipulation of HDF5 datasets. It supports delayed operations and
+block processing.")
+ (license license:artistic2.0)))
+
(define-public r-rhdf5lib
(package
(name "r-rhdf5lib")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8bd42c9429..d874fe9a13 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10654,36 +10654,6 @@ quality controls, normalization, visualization, and further analysis are also
provided.")
(license license:artistic2.0)))
-(define-public r-hdf5array
- (package
- (name "r-hdf5array")
- (version "1.16.1")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "HDF5Array" version))
- (sha256
- (base32
- "01767v90nl0499jcicpxngbbs0af5p9c5aasi5va01w3v5bnqddn"))))
- (properties `((upstream-name . "HDF5Array")))
- (build-system r-build-system)
- (inputs
- `(("zlib" ,zlib)))
- (propagated-inputs
- `(("r-biocgenerics" ,r-biocgenerics)
- ("r-delayedarray" ,r-delayedarray)
- ("r-iranges" ,r-iranges)
- ("r-matrix" ,r-matrix)
- ("r-rhdf5" ,r-rhdf5)
- ("r-rhdf5lib" ,r-rhdf5lib)
- ("r-s4vectors" ,r-s4vectors)))
- (home-page "https://bioconductor.org/packages/HDF5Array")
- (synopsis "HDF5 back end for DelayedArray objects")
- (description "This package provides an array-like container for convenient
-access and manipulation of HDF5 datasets. It supports delayed operations and
-block processing.")
- (license license:artistic2.0)))
-
(define-public r-dropbead
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
(revision "2"))
--
2.28.0
next prev parent reply other threads:[~2020-09-14 16:21 UTC|newest]
Thread overview: 14+ messages / expand[flat|nested] mbox.gz Atom feed top
2020-09-14 16:04 [bug#43400] [PATCH 00/12] Move some BioConductor to (gnu packages bioconductor) zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 01/12] gnu: r-fourcseq: Move " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 02/12] gnu: r-preprocesscore: " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 03/12] gnu: r-rgraphviz: " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 04/12] gnu: r-delayedmatrixstats: " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 05/12] gnu: r-scran: " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 06/12] gnu: r-scater: " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 07/12] gnu: r-singlecellexperiment: " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 08/12] gnu: r-beachmat: " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 09/12] gnu: r-rhdf5lib: " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 11/12] gnu: r-hitc: " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 12/12] gnu: r-fithic: " zimoun
2020-09-14 16:07 ` zimoun [this message]
2020-09-14 19:42 ` bug#43400: [PATCH 00/12] Move some BioConductor " Ricardo Wurmus
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