From: zimoun <zimon.toutoune@gmail.com>
To: 43345@debbugs.gnu.org
Cc: zimoun <zimon.toutoune@gmail.com>
Subject: [bug#43345] [PATCH 08/12] gnu: r-maldiquant: Move to (gnu packages cran).
Date: Fri, 11 Sep 2020 20:08:45 +0200 [thread overview]
Message-ID: <20200911180849.12582-8-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20200911180849.12582-1-zimon.toutoune@gmail.com>
* gnu/packages/bioinformatics.scm (r-maldiquant): Move from here ...
* gnu/packages/cran.scm (r-maldiquant): ... to here.
---
gnu/packages/bioinformatics.scm | 26 --------------------------
gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++
2 files changed, 26 insertions(+), 26 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 40c6363859..fecb3c072d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9425,32 +9425,6 @@ for analyzing gene-level association tests in meta-analyses for binary
trait.")
(license license:gpl3)))
-(define-public r-maldiquant
- (package
- (name "r-maldiquant")
- (version "1.19.3")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "MALDIquant" version))
- (sha256
- (base32
- "0b7kdz3x4sdq413h1q09l1qhcvdnnwv6fqsqwllks1cd3xy34c57"))))
- (properties `((upstream-name . "MALDIquant")))
- (build-system r-build-system)
- (home-page "https://cran.r-project.org/web/packages/MALDIquant")
- (synopsis "Quantitative analysis of mass spectrometry data")
- (description
- "This package provides a complete analysis pipeline for matrix-assisted
-laser desorption/ionization-time-of-flight (MALDI-TOF) and other
-two-dimensional mass spectrometry data. In addition to commonly used plotting
-and processing methods it includes distinctive features, namely baseline
-subtraction methods such as morphological filters (TopHat) or the
-statistics-sensitive non-linear iterative peak-clipping algorithm (SNIP), peak
-alignment using warping functions, handling of replicated measurements as well
-as allowing spectra with different resolutions.")
- (license license:gpl3+)))
-
(define-public r-protgenerics
(package
(name "r-protgenerics")
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 5d1e248cc4..a6c2518978 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -23776,3 +23776,29 @@ designs. Broman et al. (2018) <doi:10.1534/genetics.118.301595>.")
data (variant call format, e.g. VCF or BCF) or meta-analysis results in R.")
;; Any version of the GPL is acceptable
(license (list license:gpl2+ license:gpl3+))))
+
+(define-public r-maldiquant
+ (package
+ (name "r-maldiquant")
+ (version "1.19.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "MALDIquant" version))
+ (sha256
+ (base32
+ "0b7kdz3x4sdq413h1q09l1qhcvdnnwv6fqsqwllks1cd3xy34c57"))))
+ (properties `((upstream-name . "MALDIquant")))
+ (build-system r-build-system)
+ (home-page "https://cran.r-project.org/web/packages/MALDIquant")
+ (synopsis "Quantitative analysis of mass spectrometry data")
+ (description
+ "This package provides a complete analysis pipeline for matrix-assisted
+laser desorption/ionization-time-of-flight (MALDI-TOF) and other
+two-dimensional mass spectrometry data. In addition to commonly used plotting
+and processing methods it includes distinctive features, namely baseline
+subtraction methods such as morphological filters (TopHat) or the
+statistics-sensitive non-linear iterative peak-clipping algorithm (SNIP), peak
+alignment using warping functions, handling of replicated measurements as well
+as allowing spectra with different resolutions.")
+ (license license:gpl3+)))
--
2.28.0
next prev parent reply other threads:[~2020-09-11 18:11 UTC|newest]
Thread overview: 14+ messages / expand[flat|nested] mbox.gz Atom feed top
2020-09-11 18:05 [bug#43345] [PATCH 00/12] Move some CRAN packages to (gnu packages cran) zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 01/12] gnu: r-codedepends: Comment why is in bioconductor.scm zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 02/12] gnu: r-adaptivesparsity: Move to (gnu packages cran) zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 03/12] gnu: r-diffusionmap: " zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 04/12] gnu: r-igraph: " zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 05/12] gnu: r-qtl: " zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 06/12] gnu: r-qtl2: " zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 07/12] gnu: r-seqminer: " zimoun
2020-09-11 18:08 ` zimoun [this message]
2020-09-11 18:08 ` [bug#43345] [PATCH 09/12] gnu: r-seurat: " zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 11/12] gnu: r-diversitree: " zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 12/12] gnu: r-absfiltergsea: " zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 10/12] gnu: r-phangorn: " zimoun
2020-09-11 20:07 ` bug#43345: [PATCH 00/12] Move some CRAN packages " Ricardo Wurmus
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