[bug#64150] [PATCH 00/24] Various changes to support updating the default ruby.

[bug#64150] [PATCH 00/24] Various changes to support updating the default ruby.

[Christopher Baines]

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I'm looking at updating the default ruby, and these changes update some
packages that might break, plus explicitly using ruby-2.7 in places to
reduce the dependencies on ruby.

Christopher Baines (24):
  gnu: texlive-hyphen-package: Explicitly use ruby-2.7.
  gnu: texlive-hyph-utf8: Explicitly use ruby-2.7.
  gnu: texlive-bin: Explicitly use ruby-2.7.
  gnu: qtbase: Explicitly use ruby-2.7.
  gnu: texlive-hyphen-package: Use pinned ruby-hydra-minimal.
  gnu: qtwebengine-5: Explicitly use ruby-2.7.
  gnu: utf8proc-2.7.0: Explicitly use ruby-2.7.
  gnu: webkitgtk: Explicitly use ruby-2.
  gnu: mkvtoolnix: Explicitly use ruby-2.7.
  gnu: ruby-yajl-ruby: Update to 1.4.3.
  gnu: ruby-tzinfo: Update to 2.0.6.
  gnu: ruby-test-unit: Update to 3.6.0.
  gnu: ruby-sucker-punch: Update to 3.1.0.
  gnu: ruby-shindo: Update to 0.3.10.
  gnu: ruby-rjb: Update to 1.6.7.
  gnu: ruby-range-compressor: Update to 1.2.0.
  gnu: ruby-pry-doc: Update to 1.4.0.
  gnu: ruby-powerpack: Update to 0.1.3.
  gnu: ruby-mkmf-lite: Update to 0.5.2.
  gnu: ruby-memory-profiler: Update to 1.0.1.
  gnu: ruby-hocon: Update to 1.4.0.
  gnu: ruby-debug-inspector: Update to 1.1.0.
  gnu: ruby-commander: Update to 4.6.0.
  gnu: bioruby: Update to 2.0.4.

 gnu/packages/bioinformatics.scm |  32 ++---
 gnu/packages/qt.scm             |   4 +-
 gnu/packages/rails.scm          |  25 ++--
 gnu/packages/ruby.scm           | 231 ++++++++++++++++++--------------
 gnu/packages/tex.scm            |   6 +-
 gnu/packages/textutils.scm      |   2 +-
 gnu/packages/video.scm          |   2 +-
 gnu/packages/webkit.scm         |   2 +-
 8 files changed, 165 insertions(+), 139 deletions(-)


base-commit: e4087930f3ad60918689be5f4bca4ce3e22429f5
-- 
2.40.1

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[bug#64150] [PATCH 01/24] gnu: texlive-hyphen-package: Explicitly use ruby-2.7.

[Christopher Baines]

As Ruby 3 looks to cause issues.

* gnu/packages/tex.scm (texlive-hyphen-package)[native-inputs]: Explicitly use
ruby-2.7.

Signed-off-by: Christopher Baines <mail@cbaines.net>
---
 gnu/packages/tex.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/tex.scm b/gnu/packages/tex.scm
index b55dd2a5fd..e01f33304d 100644
--- a/gnu/packages/tex.scm
+++ b/gnu/packages/tex.scm
@@ -236,7 +236,7 @@ (define (texlive-hyphen-package name code locations hash)
                         (string-append "File.join(\"" ptex "\"")))
                      (invoke "ruby" "generate-ptex-patterns.rb")))))))))
       (native-inputs
-       (list ruby ruby-hydra-minimal hyph-utf8-scripts))
+       (list ruby-2.7 ruby-hydra-minimal hyph-utf8-scripts))
       (home-page "https://ctan.org/pkg/hyph-utf8"))))
 
 (define texlive-extra-src

base-commit: e4087930f3ad60918689be5f4bca4ce3e22429f5
-- 
2.40.1

[bug#64150] [PATCH 02/24] gnu: texlive-hyph-utf8: Explicitly use ruby-2.7.

[Christopher Baines]

As Ruby 3 looks to cause issues.

* gnu/packages/tex.scm (texlive-hyph-utf8)[native-inputs]: Explicitly use
ruby-2.7.

Signed-off-by: Christopher Baines <mail@cbaines.net>
---
 gnu/packages/tex.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/tex.scm b/gnu/packages/tex.scm
index e01f33304d..537d63a3ba 100644
--- a/gnu/packages/tex.scm
+++ b/gnu/packages/tex.scm
@@ -2763,7 +2763,7 @@ (define-public texlive-hyph-utf8
                 (string-append out "/share/texmf-dist/tex/luatex/hyph-utf8/")))
              #t)))))
     (native-inputs
-     (list ruby
+     (list ruby-2.7
            texlive-bin
            ;; The following packages are needed for build "tex.fmt", which we need
            ;; for a working "tex".
-- 
2.40.1

[bug#64150] [PATCH 03/24] gnu: texlive-bin: Explicitly use ruby-2.7.

[Christopher Baines]

To enable changing ruby without affecting texlive-bin.

* gnu/packages/tex.scm (texlive-bin)[inputs]: Explicitly use ruby-2.7.

Signed-off-by: Christopher Baines <mail@cbaines.net>
---
 gnu/packages/tex.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/tex.scm b/gnu/packages/tex.scm
index 537d63a3ba..6c055ed0cd 100644
--- a/gnu/packages/tex.scm
+++ b/gnu/packages/tex.scm
@@ -316,7 +316,7 @@ (define-public texlive-bin
        ("pixman" ,pixman)
        ("potrace" ,potrace)
        ("python" ,python)
-       ("ruby" ,ruby)
+       ("ruby" ,ruby-2.7)
        ("tcsh" ,tcsh)
        ("teckit" ,teckit)
        ("zlib" ,zlib)
-- 
2.40.1

[bug#64150] [PATCH 04/24] gnu: qtbase: Explicitly use ruby-2.7.

[Christopher Baines]

To avoid changing qabase-5 while changing ruby.

* gnu/packages/qt.scm (qtbase-5)[native-inputs]: Explicitly use ruby-2.7.

Signed-off-by: Christopher Baines <mail@cbaines.net>
---
 gnu/packages/qt.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/qt.scm b/gnu/packages/qt.scm
index 1e5d29d9cf..fca02e4a20 100644
--- a/gnu/packages/qt.scm
+++ b/gnu/packages/qt.scm
@@ -419,7 +419,7 @@ (define-public qtbase-5
            pkg-config
            python
            vulkan-headers
-           ruby))
+           ruby-2.7))
     (arguments
      `(#:configure-flags
        (let ((out (assoc-ref %outputs "out")))
-- 
2.40.1

[bug#64150] [PATCH 05/24] gnu: texlive-hyphen-package: Use pinned ruby-hydra-minimal.

[Christopher Baines]

To allow updating ruby without changing texlive.

* gnu/packages/ruby.scm (ruby-hydra-minimal/pinned): New variable.
* gnu/packages/tex.scm (texlive-hyphen-package)[native-inputs]: Use it

Signed-off-by: Christopher Baines <mail@cbaines.net>
---
 gnu/packages/ruby.scm | 9 +++++++++
 gnu/packages/tex.scm  | 2 +-
 2 files changed, 10 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index f28ad97e11..1de1d634bc 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -3597,6 +3597,15 @@ (define-public ruby-hydra-minimal
 It is a low-dependency variant of ruby-hydra.")
       (license license:expat))))
 
+;; Pinned variant for use by texlive
+(define-public ruby-hydra-minimal/pinned
+  (hidden-package
+   (package
+     (inherit ruby-hydra-minimal)
+     (arguments
+      (cons* #:ruby ruby-2.7
+             (package-arguments ruby-hydra-minimal))))))
+
 (define-public ruby-hydra
   (package
     (inherit ruby-hydra-minimal)
diff --git a/gnu/packages/tex.scm b/gnu/packages/tex.scm
index 6c055ed0cd..65f8d901d7 100644
--- a/gnu/packages/tex.scm
+++ b/gnu/packages/tex.scm
@@ -236,7 +236,7 @@ (define (texlive-hyphen-package name code locations hash)
                         (string-append "File.join(\"" ptex "\"")))
                      (invoke "ruby" "generate-ptex-patterns.rb")))))))))
       (native-inputs
-       (list ruby-2.7 ruby-hydra-minimal hyph-utf8-scripts))
+       (list ruby-2.7 ruby-hydra-minimal/pinned hyph-utf8-scripts))
       (home-page "https://ctan.org/pkg/hyph-utf8"))))
 
 (define texlive-extra-src
-- 
2.40.1

[bug#64150] [PATCH 06/24] gnu: qtwebengine-5: Explicitly use ruby-2.7.

[Christopher Baines]

So that ruby can change without affecting this package and it's dependents.

* gnu/packages/qt.scm (qtwebengine-5)[native-inputs]: Explicitly use ruby-2.7.

Signed-off-by: Christopher Baines <mail@cbaines.net>
---
 gnu/packages/qt.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/qt.scm b/gnu/packages/qt.scm
index fca02e4a20..de070ecaf3 100644
--- a/gnu/packages/qt.scm
+++ b/gnu/packages/qt.scm
@@ -2643,7 +2643,7 @@ (define-public qtwebengine-5
            pkg-config
            python2-six
            python-2
-           ruby))
+           ruby-2.7))
     (inputs
      (list alsa-lib
            at-spi2-core
-- 
2.40.1

[bug#64150] [PATCH 07/24] gnu: utf8proc-2.7.0: Explicitly use ruby-2.7.

[Christopher Baines]

So that ruby can change without affecting this package and it's julia related
dependents.

* gnu/packages/textutils.scm (utf8proc-2.7.0)[native-inputs]: Explicitly use
ruby-2.7.

Signed-off-by: Christopher Baines <mail@cbaines.net>
---
 gnu/packages/textutils.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/textutils.scm b/gnu/packages/textutils.scm
index 026264dc27..ba33cf7de7 100644
--- a/gnu/packages/textutils.scm
+++ b/gnu/packages/textutils.scm
@@ -249,7 +249,7 @@ (define-public utf8proc-2.7.0
               (sha256
                (base32 "1g77s8g9443dd92f82pbkim7rk51s7xdwa3mxpzb1lcw8ryxvvg3"))))
           ;; For tests
-          ("ruby" ,ruby)))))))
+          ("ruby" ,ruby-2.7)))))))
 
 (define-public libconfuse
   (package
-- 
2.40.1

[bug#64150] [PATCH 08/24] gnu: webkitgtk: Explicitly use ruby-2.

[Christopher Baines]

So that ruby can change without affecting this package and its dependants.

* gnu/packages/webkit.scm (webkitgtk)[native-inputs]: Explicitly use ruby-2.7.

Signed-off-by: Christopher Baines <mail@cbaines.net>
---
 gnu/packages/webkit.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/webkit.scm b/gnu/packages/webkit.scm
index f1b810adbd..5ab93ad9eb 100644
--- a/gnu/packages/webkit.scm
+++ b/gnu/packages/webkit.scm
@@ -222,7 +222,7 @@ (define-public webkitgtk
            pkg-config
            python-wrapper
            gi-docgen
-           ruby
+           ruby-2.7
            unifdef))
     (propagated-inputs
      (list gtk+ libsoup))
-- 
2.40.1

[bug#64150] [PATCH 09/24] gnu: mkvtoolnix: Explicitly use ruby-2.7.

[Christopher Baines]

To allow updating ruby without affecting this package.

* gnu/packages/video.scm (mkvtoolnix)[native-inputs]: Explicitly use ruby-2.7.

Signed-off-by: Christopher Baines <mail@cbaines.net>
---
 gnu/packages/video.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm
index 66e6cb5408..908155755e 100644
--- a/gnu/packages/video.scm
+++ b/gnu/packages/video.scm
@@ -1035,7 +1035,7 @@ (define-public mkvtoolnix
        ("pkg-config" ,pkg-config)
        ("po4a" ,po4a)
        ("qttools-5" ,qttools-5)
-       ("ruby" ,ruby)))
+       ("ruby" ,ruby-2.7)))
     (arguments
      `(#:configure-flags
        (list (string-append "--with-boost="
-- 
2.40.1

[bug#64150] [PATCH 10/24] gnu: ruby-yajl-ruby: Update to 1.4.3.

[Christopher Baines]

* gnu/packages/ruby.scm (ruby-yajl-ruby): Update to 1.4.3.
[arguments]: Update style.
---
 gnu/packages/ruby.scm | 22 +++++++++++-----------
 1 file changed, 11 insertions(+), 11 deletions(-)

diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index 1de1d634bc..f24c709280 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -9842,25 +9842,25 @@ (define-public ruby-bio-logger
 (define-public ruby-yajl-ruby
   (package
     (name "ruby-yajl-ruby")
-    (version "1.4.1")
+    (version "1.4.3")
     (source
      (origin
        (method url-fetch)
        (uri (rubygems-uri "yajl-ruby" version))
        (sha256
         (base32
-         "16v0w5749qjp13xhjgr2gcsvjv6mf35br7iqwycix1n2h7kfcckf"))))
+         "1lni4jbyrlph7sz8y49q84pb0sbj82lgwvnjnsiv01xf26f4v5wc"))))
     (build-system ruby-build-system)
     (arguments
-     '(#:test-target "spec"
-       #:phases
-       (modify-phases %standard-phases
-         (add-before 'check 'patch-test-to-update-load-path
-           (lambda _
-             (substitute* "spec/parsing/large_number_spec.rb"
-               (("require \"yajl\"")
-                "$LOAD_PATH << 'lib'; require 'yajl'"))
-             #t)))))
+     (list
+      #:test-target "spec"
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'check 'patch-test-to-update-load-path
+            (lambda _
+              (substitute* "spec/parsing/large_number_spec.rb"
+                (("require \"yajl\"")
+                 "$LOAD_PATH << 'lib'; require 'yajl'")))))))
      (native-inputs
       (list ruby-rake-compiler ruby-rspec))
      (synopsis "Streaming JSON parsing and encoding library for Ruby")
-- 
2.40.1

[bug#64150] [PATCH 11/24] gnu: ruby-tzinfo: Update to 2.0.6.

[Christopher Baines]

* gnu/packages/ruby.scm (ruby-tzinfo): Update to 2.0.6.
[arguments,propagated-inputs]: Update style.
---
 gnu/packages/ruby.scm | 42 ++++++++++++++++++++----------------------
 1 file changed, 20 insertions(+), 22 deletions(-)

diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index f24c709280..1dce3dc315 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -7011,7 +7011,7 @@ (define-public ruby-thread-safe
 (define-public ruby-tzinfo
   (package
     (name "ruby-tzinfo")
-    (version "2.0.4")
+    (version "2.0.6")
     (source
      (origin
        (method git-fetch)
@@ -7022,31 +7022,29 @@ (define-public ruby-tzinfo
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "0jaq1givdaz5jxz47xngyj3j315n872rk97mnpm5njwm48wy45yh"))))
+         "1n1gzjqwwnx209h8d054miva0y7x17db2ahy7jav5r25ibhh7rgm"))))
     (build-system ruby-build-system)
     (arguments
-     '(#:phases
-       (modify-phases %standard-phases
-         (add-after 'unpack 'skip-safe-tests
-           (lambda _
-             (substitute* "test/test_utils.rb"
-               (("def safe_test\\(options = \\{\\}\\)")
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'skip-safe-tests
+            (lambda _
+              (substitute* "test/test_utils.rb"
+                (("def safe_test\\(options = \\{\\}\\)")
                  "def safe_test(options = {})
-      skip('The Guix build environment has an unsafe load path')"))
-             #t))
-         (add-before 'check 'pre-check
-           (lambda _
-             (setenv "HOME" (getcwd))
-             (substitute* "Gemfile"
-               (("simplecov.*") "simplecov'\n"))
-             #t))
-         (replace 'check
-           (lambda* (#:key tests? test-target #:allow-other-keys)
-             (when tests?
-               (invoke "bundler" "exec" "rake" test-target))
-             #t)))))
+      skip('The Guix build environment has an unsafe load path')"))))
+          (add-before 'check 'pre-check
+            (lambda _
+              (setenv "HOME" (getcwd))
+              (substitute* "Gemfile"
+                (("simplecov.*") "simplecov'\n"))))
+          (replace 'check
+            (lambda* (#:key tests? test-target #:allow-other-keys)
+              (when tests?
+                (invoke "bundler" "exec" "rake" test-target)))))))
     (propagated-inputs
-     `(("ruby-concurrent-ruby" ,ruby-concurrent)))
+     (list ruby-concurrent))
     (native-inputs
      (list ruby-simplecov))
     (synopsis "Time zone library for Ruby")
-- 
2.40.1

[bug#64150] [PATCH 12/24] gnu: ruby-test-unit: Update to 3.6.0.

[Christopher Baines]

* gnu/packages/ruby.scm (ruby-test-unit): Update to 3.6.0.
[source]: Switch to Git as tests missing from gem.
---
 gnu/packages/ruby.scm | 11 +++++++----
 1 file changed, 7 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index 1dce3dc315..d411d643ae 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -4553,13 +4553,16 @@ (define-public ruby-test-construct
 (define-public ruby-test-unit
   (package
     (name "ruby-test-unit")
-    (version "3.4.4")
+    (version "3.6.0")
     (source (origin
-              (method url-fetch)
-              (uri (rubygems-uri "test-unit" version))
+              (method git-fetch)        ;for tests
+              (uri (git-reference
+                    (url "https://github.com/test-unit/test-unit")
+                    (commit version)))
+              (file-name (git-file-name name version))
               (sha256
                (base32
-                "15isy7vhppbfd0032klirj9gxp65ygkzjdwrmm28xpirlcsk6qpd"))))
+                "0w1m432q3y5v9lkak8yyxadak3z17bsp6afni97i4zjdgfz7niz2"))))
     (build-system ruby-build-system)
     (propagated-inputs
      (list ruby-power-assert))
-- 
2.40.1

[bug#64150] [PATCH 13/24] gnu: ruby-sucker-punch: Update to 3.1.0.

[Christopher Baines]

* gnu/packages/ruby.scm (ruby-sucker-punch): Update to 3.1.0.
---
 gnu/packages/ruby.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index d411d643ae..99d15019f1 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -15097,13 +15097,13 @@ (define-public ruby-cmath
 (define-public ruby-sucker-punch
   (package
     (name "ruby-sucker-punch")
-    (version "3.0.1")
+    (version "3.1.0")
     (source
      (origin
        (method url-fetch)
        (uri (rubygems-uri "sucker_punch" version))
        (sha256
-        (base32 "0yams24wndpj7dzdysvm4z1w6ggg4xvj4snxba66prahhxvik4xl"))))
+        (base32 "12by9vx8q6l4i56q62k1s1ymaxbpg4rny5zngj5i5h09kyh2yp4p"))))
     (build-system ruby-build-system)
     (arguments
      `(#:phases
-- 
2.40.1

[bug#64150] [PATCH 14/24] gnu: ruby-shindo: Update to 0.3.10.

[Christopher Baines]

* gnu/packages/ruby.scm (ruby-shindo): Update to 0.3.10.
[arguments]: Update style.
---
 gnu/packages/ruby.scm | 30 +++++++++++++++---------------
 1 file changed, 15 insertions(+), 15 deletions(-)

diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index 99d15019f1..f5eb6c5332 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -3629,28 +3629,28 @@ (define-public ruby-hydra
 (define-public ruby-shindo
   (package
     (name "ruby-shindo")
-    (version "0.3.8")
+    (version "0.3.10")
     (source (origin
               (method url-fetch)
               (uri (rubygems-uri "shindo" version))
               (sha256
                (base32
-                "0s8v1jbz8i0jh92f2fgxb3p51l1azrpkc8nv4mhrqy4vndpvd7wq"))))
+                "0qnqixhi0g8v44v13f3gynpbvvw6xqi1wajsxdjsx5rhzizfsj91"))))
     (build-system ruby-build-system)
     (arguments
-     `(#:test-target "shindo_tests"
-       #:phases
-       (modify-phases %standard-phases
-         (add-after 'unpack 'fix-tests
-           (lambda _
-             (substitute* "tests/tests_helper.rb"
-               (("-rubygems") ""))
-             (substitute* "Rakefile"
-               (("system \"shindo") "system \"./bin/shindo")
-               ;; This test doesn't work, so we disable it.
-               (("fail \"The build_error test should fail") "#")
-               ((" -rubygems") ""))
-             #t)))))
+     (list
+      #:test-target "shindo_tests"
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'fix-tests
+            (lambda _
+              (substitute* "tests/tests_helper.rb"
+                (("-rubygems") ""))
+              (substitute* "Rakefile"
+                (("system \"shindo") "system \"./bin/shindo")
+                ;; This test doesn't work, so we disable it.
+                (("fail \"The build_error test should fail") "#")
+                ((" -rubygems") "")))))))
     (propagated-inputs
      (list ruby-formatador))
     (synopsis "Simple depth first Ruby testing")
-- 
2.40.1

[bug#64150] [PATCH 15/24] gnu: ruby-rjb: Update to 1.6.7.

[Christopher Baines]

* gnu/packages/ruby.scm (ruby-rjb): Update to 1.6.7.
[arguments]: Update style.
---
 gnu/packages/ruby.scm | 18 +++++++++---------
 1 file changed, 9 insertions(+), 9 deletions(-)

diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index f5eb6c5332..490edba443 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -1212,22 +1212,22 @@ (define-public ruby-bump
 (define-public ruby-rjb
   (package
     (name "ruby-rjb")
-    (version "1.5.5")
+    (version "1.6.7")
     (source (origin
               (method url-fetch)
               (uri (rubygems-uri "rjb" version))
               (sha256
                (base32
-                "1ppj8rbicj3w0nhh7f73mflq19yd7pzdzkh2a91hcvphriy5b0ca"))))
+                "0ck802bm8cklhmqsgzhsa0y8lg80qy52dp3m8rlld3zc5gv1rsb9"))))
     (build-system ruby-build-system)
     (arguments
-     `(#:tests? #f ; no rakefile
-       #:phases
-       (modify-phases %standard-phases
-         (add-before 'build 'set-java-home
-          (lambda* (#:key inputs #:allow-other-keys)
-            (setenv "JAVA_HOME" (assoc-ref inputs "jdk"))
-            #t)))))
+     (list
+      #:tests? #f ; no rakefile
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'build 'set-java-home
+            (lambda* (#:key inputs #:allow-other-keys)
+              (setenv "JAVA_HOME" (assoc-ref inputs "jdk")))))))
     (native-inputs
      `(("jdk" ,icedtea "jdk")))
     (synopsis "Ruby-to-Java bridge using the Java Native Interface")
-- 
2.40.1

[bug#64150] [PATCH 16/24] gnu: ruby-range-compressor: Update to 1.2.0.

[Christopher Baines]

* gnu/packages/ruby.scm (ruby-range-compressor): Update to 1.2.0.
[arguments]: Update style.
---
 gnu/packages/ruby.scm | 21 +++++++++++----------
 1 file changed, 11 insertions(+), 10 deletions(-)

diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index 490edba443..6a2b89cebd 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -8471,7 +8471,7 @@ (define-public ruby-character-set
 (define-public ruby-range-compressor
   (package
     (name "ruby-range-compressor")
-    (version "1.0.0")
+    (version "1.2.0")
     (source
       (origin
         (method git-fetch)
@@ -8481,17 +8481,18 @@ (define-public ruby-range-compressor
         (file-name (git-file-name name version))
         (sha256
          (base32
-          "0y8slri2msyyg2szgwgriqd6qw9hkxycssdrcl5lk2dbcq5zvn54"))))
+          "1zmc44si5ac2h7r1x4f1j8z5yr6wz528c7dssh0g70fmczs3pfga"))))
     (build-system ruby-build-system)
     (arguments
-     `(#:test-target "spec"
-       #:phases (modify-phases %standard-phases
-                  (add-after 'extract-gemspec 'strip-version-requirements
-                    (lambda _
-                      (substitute* "range_compressor.gemspec"
-                        (("(.*add_.*dependency '[_A-Za-z0-9-]+').*" _ stripped)
-                         (string-append stripped "\n")))
-                      #t)))))
+     (list
+      #:test-target "spec"
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'extract-gemspec 'strip-version-requirements
+            (lambda _
+              (substitute* "range_compressor.gemspec"
+                (("(.*add_.*dependency '[_A-Za-z0-9-]+').*" _ stripped)
+                 (string-append stripped "\n"))))))))
     (native-inputs
      (list ruby-rspec))
     (synopsis "Simple arrays of objects to arrays of ranges compressor")
-- 
2.40.1

[bug#64150] [PATCH 17/24] gnu: ruby-pry-doc: Update to 1.4.0.

[Christopher Baines]

* gnu/packages/ruby.scm (ruby-pry-doc): Update to 1.4.0.
---
 gnu/packages/ruby.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index 6a2b89cebd..a221f2fcaa 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -6732,13 +6732,13 @@ (define-public ruby-pry
 (define-public ruby-pry-doc
   (package
     (name "ruby-pry-doc")
-    (version "1.3.0")
+    (version "1.4.0")
     (source (origin
               (method url-fetch)
               (uri (rubygems-uri "pry-doc" version))
               (sha256
                (base32
-                "0wyvql6pb6m8jl8bsamabxhxhd86bnqblspaxzz05sl0fm2ynj0r"))))
+                "1pp43n69p6bjvc640wgcz295w1q2v9awcqgbwcqn082dbvq5xvnx"))))
     (build-system ruby-build-system)
     (propagated-inputs (list ruby-pry ruby-yard))
     (native-inputs (list ruby-latest-ruby ruby-rspec ruby-rake)) ;for tests
-- 
2.40.1

[bug#64150] [PATCH 18/24] gnu: ruby-powerpack: Update to 0.1.3.

[Christopher Baines]

* gnu/packages/ruby.scm (ruby-powerpack): Update to 0.1.3.
[arguments]: Update style.
---
 gnu/packages/ruby.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index a221f2fcaa..9811937674 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -4377,17 +4377,17 @@ (define-public ruby-power-assert
 (define-public ruby-powerpack
   (package
     (name "ruby-powerpack")
-    (version "0.1.2")
+    (version "0.1.3")
     (source
      (origin
        (method url-fetch)
        (uri (rubygems-uri "powerpack" version))
        (sha256
         (base32
-         "1r51d67wd467rpdfl6x43y84vwm8f5ql9l9m85ak1s2sp3nc5hyv"))))
+         "1f71axvlhnxja0k17qqxdi4qh5ck807hqg4i3j6cgy8fgzmyg7rg"))))
     (build-system ruby-build-system)
     (arguments
-     '(#:test-target "spec"))
+     (list #:test-target "spec"))
     (native-inputs
      (list bundler ruby-rspec ruby-yard))
     (synopsis "Useful extensions to core Ruby classes")
-- 
2.40.1

[bug#64150] [PATCH 19/24] gnu: ruby-mkmf-lite: Update to 0.5.2.

[Christopher Baines]

* gnu/packages/ruby.scm (ruby-mkmf-lite): Update to 0.5.2.
[arguments]: Avoid the rubocop dependency.
[native-inputs]: Add ruby-rspec.
---
 gnu/packages/ruby.scm | 15 +++++++++++++--
 1 file changed, 13 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index 9811937674..d8e85a79aa 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -4704,16 +4704,27 @@ (define-public ruby-metaclass
 (define-public ruby-mkmf-lite
   (package
     (name "ruby-mkmf-lite")
-    (version "0.3.2")
+    (version "0.5.2")
     (source (origin
               (method url-fetch)
               (uri (rubygems-uri "mkmf-lite" version))
               (sha256
                (base32
-                "0br9k6zijj1zc25n8p7f2j1mwl58nfgdknf3q13h9k156jvrir06"))))
+                "0rqa5kzswhqkj7r9mqrqz4mjd2vdxsblgybb52gj3mwr1gwvl4c5"))))
     (build-system ruby-build-system)
+    (arguments
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          ;; Avoid rubocop dependency
+          (replace 'check
+            (lambda* (#:key tests? #:allow-other-keys)
+              (when tests?
+                (invoke "rspec")))))))
     (propagated-inputs
      (list ruby-ptools))
+    (native-inputs
+     (list ruby-rspec))
     (synopsis "Lightweight alternative to @code{mkmf}")
     (description
      "@code{mkmf-lite} is a light version of Ruby's @code{mkmf.rb} designed
-- 
2.40.1

[bug#64150] [PATCH 20/24] gnu: ruby-memory-profiler: Update to 1.0.1.

[Christopher Baines]

* gnu/packages/ruby.scm (ruby-memory-profiler): Update to 1.0.1.
---
 gnu/packages/ruby.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index d8e85a79aa..6dc053bf64 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -9215,7 +9215,7 @@ (define-public ruby-ruby-memcheck
 (define-public ruby-memory-profiler
   (package
     (name "ruby-memory-profiler")
-    (version "1.0.0")
+    (version "1.0.1")
     (source
       (origin
         (method git-fetch)
@@ -9225,7 +9225,7 @@ (define-public ruby-memory-profiler
         (file-name (git-file-name name version))
         (sha256
          (base32
-          "07yqv11q68xg2fqkrhs6ysngryk8b9zq6qzh24rgx9xqv6qfnj0w"))))
+          "1z1x0rymfv45gh1y3s46w5pga5y8cvgn228jiwlnhc8hin3zig84"))))
     (build-system ruby-build-system)
     (synopsis "Memory profiling routines for Ruby")
     (description
-- 
2.40.1

[bug#64150] [PATCH 21/24] gnu: ruby-hocon: Update to 1.4.0.

[Christopher Baines]

* gnu/packages/ruby.scm (ruby-hocon): Update to 1.4.0.
[arguments]: Update style.
---
 gnu/packages/ruby.scm | 19 ++++++++++---------
 1 file changed, 10 insertions(+), 9 deletions(-)

diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index 6dc053bf64..6695bb025b 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -5977,7 +5977,7 @@ (define-public ruby-git
 (define-public ruby-hocon
   (package
     (name "ruby-hocon")
-    (version "1.3.1")
+    (version "1.4.0")
     (home-page "https://github.com/puppetlabs/ruby-hocon")
     (source (origin
               (method git-fetch)
@@ -5985,16 +5985,17 @@ (define-public ruby-hocon
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "172hh2zr0n9nnszv0qvlgwszgkrq84yahrg053m68asy79zpmbqr"))))
+                "04wgv0pwrghawnl6qp346z59fvp9v37jymq8p0lsrzxa6nvrykmk"))))
     (build-system ruby-build-system)
     (arguments
-     '(#:phases (modify-phases %standard-phases
-                  (replace 'check
-                    (lambda* (#:key tests? #:allow-other-keys)
-                      (if tests?
-                          (invoke "rspec")
-                          (format #t "test suite not run~%"))
-                      #t)))))
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (replace 'check
+            (lambda* (#:key tests? #:allow-other-keys)
+              (if tests?
+                  (invoke "rspec")
+                  (format #t "test suite not run~%")))))))
     (native-inputs
      (list bundler ruby-rspec))
     (synopsis "HOCON config library")
-- 
2.40.1

[bug#64150] [PATCH 22/24] gnu: ruby-debug-inspector: Update to 1.1.0.

[Christopher Baines]

* gnu/packages/rails.scm (ruby-debug-inspector): Update to 1.1.0.
[arguments]: Update style.
[native-inputs]: Add ruby-rake-compiler.
---
 gnu/packages/rails.scm | 25 ++++++++++++++-----------
 1 file changed, 14 insertions(+), 11 deletions(-)

diff --git a/gnu/packages/rails.scm b/gnu/packages/rails.scm
index b1abb65a6d..9709121a19 100644
--- a/gnu/packages/rails.scm
+++ b/gnu/packages/rails.scm
@@ -207,25 +207,28 @@ (define-public ruby-sass-rails
 (define-public ruby-debug-inspector
   (package
     (name "ruby-debug-inspector")
-    (version "0.0.3")
+    (version "1.1.0")
     (source
      (origin
        (method url-fetch)
        (uri (rubygems-uri "debug_inspector" version))
        (sha256
         (base32
-         "0vxr0xa1mfbkfcrn71n7c4f2dj7la5hvphn904vh20j3x4j5lrx0"))))
+         "01l678ng12rby6660pmwagmyg8nccvjfgs3487xna7ay378a59ga"))))
     (build-system ruby-build-system)
     (arguments
-     `(#:phases
-       (modify-phases %standard-phases
-         (replace 'check
-           (lambda _
-             (invoke "rake" "compile")
-             (invoke "ruby" "-Ilib" "-e"
-                     (string-append
-                      "require 'debug_inspector'; RubyVM::DebugInspector."
-                      "open{|dc| p dc.backtrace_locations}")))))))
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (replace 'check
+            (lambda _
+              (invoke "rake" "compile")
+              (invoke "ruby" "-Ilib" "-e"
+                      (string-append
+                       "require 'debug_inspector'; RubyVM::DebugInspector."
+                       "open{|dc| p dc.backtrace_locations}")))))))
+    (native-inputs
+     (list ruby-rake-compiler))
     (synopsis "Ruby wrapper for the MRI 2.0 debug_inspector API")
     (description
      "This package provides a Ruby wrapper for the MRI 2.0 debug_inspector
-- 
2.40.1

[bug#64150] [PATCH 23/24] gnu: ruby-commander: Update to 4.6.0.

[Christopher Baines]

* gnu/packages/ruby.scm (ruby-commander): Update to 4.6.0.
[arguments]: Update style.
---
 gnu/packages/ruby.scm | 26 +++++++++++++-------------
 1 file changed, 13 insertions(+), 13 deletions(-)

diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index 6695bb025b..1feb43d649 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -321,27 +321,27 @@ (define-public mruby
 (define-public ruby-commander
   (package
     (name "ruby-commander")
-    (version "4.4.7")
+    (version "4.6.0")
     (source
      (origin
        (method url-fetch)
        (uri (rubygems-uri "commander" version))
        (sha256
         (base32
-         "1pxakz596fjqak3cdbha6iva1dlqis86i3kjrgg6lf3sp8i5vhwg"))))
+         "1n8k547hqq9hvbyqbx2qi08g0bky20bbjca1df8cqq5frhzxq7bx"))))
     (build-system ruby-build-system)
     (arguments
-     `(#:test-target "spec"
-       #:phases
-       (modify-phases %standard-phases
-         ;; Don't run or require rubocop, the code linting tool, as this is a
-         ;; bit unnecessary.
-         (add-after 'unpack 'dont-run-rubocop
-           (lambda _
-             (substitute* "Rakefile"
-               ((".*rubocop.*") "")
-               ((".*RuboCop.*") ""))
-             #t)))))
+     (list
+      #:test-target "spec"
+      #:phases
+      #~(modify-phases %standard-phases
+          ;; Don't run or require rubocop, the code linting tool, as this is a
+          ;; bit unnecessary.
+          (add-after 'unpack 'dont-run-rubocop
+            (lambda _
+              (substitute* "Rakefile"
+                ((".*rubocop.*") "")
+                ((".*RuboCop.*") "")))))))
     (propagated-inputs
      (list ruby-highline))
     (native-inputs
-- 
2.40.1

[bug#64150] [PATCH 24/24] gnu: bioruby: Update to 2.0.4.

[Christopher Baines]

* gnu/packages/bioinformatics.scm (bioruby): Update to 2.0.4.
[arguments]: Update style.
---
 gnu/packages/bioinformatics.scm | 32 ++++++++++++++++----------------
 1 file changed, 16 insertions(+), 16 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9e356cba5d..4edcc28d12 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10876,34 +10876,34 @@ (define-public bio-blastxmlparser
 (define-public bioruby
   (package
     (name "bioruby")
-    (version "1.5.2")
+    (version "2.0.4")
     (source
      (origin
        (method url-fetch)
        (uri (rubygems-uri "bio" version))
        (sha256
         (base32
-         "1d56amdsjv1mag7m6gv2w0xij8hqx1v5xbdjsix8sp3yp36m7938"))))
+         "08aknxk2ingwscwfqpw5vnax6jpk1sxfaialravladb63hcl8dx9"))))
     (build-system ruby-build-system)
     (propagated-inputs
      (list ruby-libxml))
     (native-inputs
      (list which))  ; required for test phase
     (arguments
-     `(#:phases
-       (modify-phases %standard-phases
-         (add-before 'build 'patch-test-command
-          (lambda _
-            (substitute* '("test/functional/bio/test_command.rb")
-              (("/bin/sh") (which "sh")))
-            (substitute* '("test/functional/bio/test_command.rb")
-              (("/bin/ls") (which "ls")))
-            (substitute* '("test/functional/bio/test_command.rb")
-              (("which") (which "which")))
-            (substitute* '("test/functional/bio/test_command.rb",
-                           "test/data/command/echoarg2.sh")
-              (("/bin/echo") (which "echo")))
-            #t)))))
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'build 'patch-test-command
+            (lambda _
+              (substitute* '("test/functional/bio/test_command.rb")
+                (("/bin/sh") (which "sh")))
+              (substitute* '("test/functional/bio/test_command.rb")
+                (("/bin/ls") (which "ls")))
+              (substitute* '("test/functional/bio/test_command.rb")
+                (("which") (which "which")))
+              (substitute* '("test/functional/bio/test_command.rb"
+                             "test/data/command/echoarg2.sh")
+                (("/bin/echo") (which "echo"))))))))
     (synopsis "Ruby library, shell and utilities for bioinformatics")
     (description "BioRuby comes with a comprehensive set of Ruby development
 tools and libraries for bioinformatics and molecular biology.  BioRuby has
-- 
2.40.1

[bug#64150] [PATCH 08/24] gnu: webkitgtk: Explicitly use ruby-2.

[Liliana Marie Prikler]

Am Sonntag, dem 18.06.2023 um 12:28 +0100 schrieb Christopher Baines:
> So that ruby can change without affecting this package and its
> dependants.
> 
> * gnu/packages/webkit.scm (webkitgtk)[native-inputs]: Explicitly use
> ruby-2.7.
> 
> Signed-off-by: Christopher Baines <mail@cbaines.net>
On the off chance that one of the GNOME team has to comment, LGTM.

You should probably commit this without the Signed-off-by part, though,
given that this seems to be your own commit.

Cheers

[bug#64150] [PATCH 08/24] gnu: webkitgtk: Explicitly use ruby-2.

[Christopher Baines]

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Liliana Marie Prikler <liliana.prikler@gmail.com> writes:

> Am Sonntag, dem 18.06.2023 um 12:28 +0100 schrieb Christopher Baines:
>> So that ruby can change without affecting this package and its
>> dependants.
>>
>> * gnu/packages/webkit.scm (webkitgtk)[native-inputs]: Explicitly use
>> ruby-2.7.
>>
>> Signed-off-by: Christopher Baines <mail@cbaines.net>
>
> On the off chance that one of the GNOME team has to comment, LGTM.

I didn't realise you (and others were included in the X-Debbugs-Cc)
headers here, so apologies for that.

Anyway, team approval was discussed in #61894, but it hasn't happened
yet. I still appreciate you taking a look and your input though.

> You should probably commit this without the Signed-off-by part, though,
> given that this seems to be your own commit.

Indeed, I've removed that locally now.

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bug#64150: [PATCH 00/24] Various changes to support updating the default ruby.

[Christopher Baines]

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Christopher Baines <mail@cbaines.net> writes:

> I'm looking at updating the default ruby, and these changes update some
> packages that might break, plus explicitly using ruby-2.7 in places to
> reduce the dependencies on ruby.
>
> Christopher Baines (24):
>   gnu: texlive-hyphen-package: Explicitly use ruby-2.7.
>   gnu: texlive-hyph-utf8: Explicitly use ruby-2.7.
>   gnu: texlive-bin: Explicitly use ruby-2.7.
>   gnu: qtbase: Explicitly use ruby-2.7.
>   gnu: texlive-hyphen-package: Use pinned ruby-hydra-minimal.
>   gnu: qtwebengine-5: Explicitly use ruby-2.7.
>   gnu: utf8proc-2.7.0: Explicitly use ruby-2.7.
>   gnu: webkitgtk: Explicitly use ruby-2.
>   gnu: mkvtoolnix: Explicitly use ruby-2.7.
>   gnu: ruby-yajl-ruby: Update to 1.4.3.
>   gnu: ruby-tzinfo: Update to 2.0.6.
>   gnu: ruby-test-unit: Update to 3.6.0.
>   gnu: ruby-sucker-punch: Update to 3.1.0.
>   gnu: ruby-shindo: Update to 0.3.10.
>   gnu: ruby-rjb: Update to 1.6.7.
>   gnu: ruby-range-compressor: Update to 1.2.0.
>   gnu: ruby-pry-doc: Update to 1.4.0.
>   gnu: ruby-powerpack: Update to 0.1.3.
>   gnu: ruby-mkmf-lite: Update to 0.5.2.
>   gnu: ruby-memory-profiler: Update to 1.0.1.
>   gnu: ruby-hocon: Update to 1.4.0.
>   gnu: ruby-debug-inspector: Update to 1.1.0.
>   gnu: ruby-commander: Update to 4.6.0.
>   gnu: bioruby: Update to 2.0.4.
>
>  gnu/packages/bioinformatics.scm |  32 ++---
>  gnu/packages/qt.scm             |   4 +-
>  gnu/packages/rails.scm          |  25 ++--
>  gnu/packages/ruby.scm           | 231 ++++++++++++++++++--------------
>  gnu/packages/tex.scm            |   6 +-
>  gnu/packages/textutils.scm      |   2 +-
>  gnu/packages/video.scm          |   2 +-
>  gnu/packages/webkit.scm         |   2 +-
>  8 files changed, 165 insertions(+), 139 deletions(-)

QA hasn't quite finished testing this, but I think I checked everything
builds locally on x86_64-linux (at least after also updating
ruby-ptools).

I've now pushed to master as 53d80d04854f263e360d5f2b9e1d00ff5dad5227.

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