From: Arun Isaac <arunisaac@systemreboot.net>
To: 66690@debbugs.gnu.org
Cc: "Arun Isaac" <arunisaac@systemreboot.net>,
"Arun Isaac" <arunisaac@systemreboot.net>,
"Ludovic Courtès" <ludo@gnu.org>
Subject: [bug#66690] [PATCH v2 4/8] gnu: Add python-cwlformat.
Date: Thu, 15 Feb 2024 20:46:21 +0000 [thread overview]
Message-ID: <baa3a86661953e6b6841244039be1a7f99b929e3.1708029746.git.arunisaac@systemreboot.net> (raw)
In-Reply-To: <cover.1708029746.git.arunisaac@systemreboot.net>
* gnu/packages/bioinformatics.scm (python-cwlformat): New variable.
Change-Id: Ib2d79e350ab100c61c7afe2d5d3eafc72146e493
---
gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 75cfad51a6..48e56945b3 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5138,6 +5138,33 @@ (define-public python-scrublet
doublets in single-cell RNA-seq data.")
(license license:expat)))
+(define-public python-cwlformat
+ (package
+ (name "python-cwlformat")
+ (version "2022.02.18")
+ (source
+ ;; The PyPI tarball is missing Readme.md. Readme.md is required for the
+ ;; build.
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/rabix/cwl-format")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0agkz2w86k91rc9m5vx5hsqi5nm6fcmzkng6j99hjapz0r9233ql"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs
+ (list python-importlib-resources
+ python-ruamel.yaml))
+ (home-page "https://github.com/rabix/cwl-format")
+ (synopsis "Prettifier for CWL code")
+ (description "@code{python-cwlformat} is a specification and a reference
+implementation for a very opinionated @acronym{CWL, Common Workflow Language}
+code formatter. It outputs CWL in a standardized YAML format.")
+ (license license:asl2.0)))
+
(define-public cwltool
(package
(name "cwltool")
--
2.41.0
next prev parent reply other threads:[~2024-02-15 20:48 UTC|newest]
Thread overview: 21+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-10-22 22:27 [bug#66690] [PATCH 0/7] Upgrade cwltool Arun Isaac
2023-10-23 8:09 ` [bug#66690] [PATCH 1/7] gnu: python-ruamel.yaml.clib: Update to 0.2.7 Arun Isaac
2023-10-23 8:09 ` [bug#66690] [PATCH 2/7] gnu: python-ruamel.yaml: Update to 0.17.40 Arun Isaac
2023-10-23 8:09 ` [bug#66690] [PATCH 3/7] gnu: python-schema-salad: Update to 8.4.20230927144413 Arun Isaac
2023-10-23 8:09 ` [bug#66690] [PATCH 4/7] gnu: Add python-cwlformat Arun Isaac
2023-10-23 8:09 ` [bug#66690] [PATCH 5/7] gnu: Add python-cwl-upgrader Arun Isaac
2023-10-23 8:09 ` [bug#66690] [PATCH 6/7] gnu: Add python-cwl-utils Arun Isaac
2023-10-23 8:09 ` [bug#66690] [PATCH 7/7] gnu: cwltool: Update to 3.1.20230601100705 Arun Isaac
2023-11-22 14:37 ` [bug#66690] [PATCH 0/7] Upgrade cwltool Ludovic Courtès
2023-11-23 0:35 ` Arun Isaac
2024-02-15 20:46 ` [bug#66690] [PATCH v2 0/8] " Arun Isaac
2024-02-15 20:46 ` [bug#66690] [PATCH v2 1/8] gnu: python-ruamel.yaml.clib: Update to 0.2.8 Arun Isaac
2024-02-15 20:46 ` [bug#66690] [PATCH v2 2/8] gnu: python-ruamel-yaml: Update to 0.18.6 Arun Isaac
2024-02-15 20:46 ` [bug#66690] [PATCH v2 3/8] gnu: python-schema-salad: Update to 8.5.20240102191335 Arun Isaac
2024-02-15 20:46 ` Arun Isaac [this message]
2024-02-15 20:46 ` [bug#66690] [PATCH v2 5/8] gnu: Add python-cwl-upgrader Arun Isaac
2024-02-15 20:46 ` [bug#66690] [PATCH v2 6/8] gnu: Add python-cwl-utils Arun Isaac
2024-02-15 20:46 ` [bug#66690] [PATCH v2 7/8] gnu: Add python-spython Arun Isaac
2024-02-15 20:46 ` [bug#66690] [PATCH v2 8/8] gnu: cwltool: Update to 3.1.20240112164112 Arun Isaac
2024-02-18 22:39 ` [bug#66690] [PATCH v2 0/8] Upgrade cwltool Ludovic Courtès
2024-02-22 13:16 ` bug#66690: " Arun Isaac
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