From: Arun Isaac <arunisaac@systemreboot.net>
To: 66690@debbugs.gnu.org
Cc: "Arun Isaac" <arunisaac@systemreboot.net>,
"Arun Isaac" <arunisaac@systemreboot.net>,
"Ludovic Courtès" <ludo@gnu.org>
Subject: [bug#66690] [PATCH v2 6/8] gnu: Add python-cwl-utils.
Date: Thu, 15 Feb 2024 20:46:23 +0000 [thread overview]
Message-ID: <ade7517f3e3c36a1cafe0b6fbe05df7a08aa96c2.1708029746.git.arunisaac@systemreboot.net> (raw)
In-Reply-To: <cover.1708029746.git.arunisaac@systemreboot.net>
* gnu/packages/bioinformatics.scm (python-cwl-utils): New variable.
Change-Id: I9347c80c0e866b89a7d432091fbcf1bc009209a5
---
gnu/packages/bioinformatics.scm | 43 +++++++++++++++++++++++++++++++++
1 file changed, 43 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 438b22800c..35c4d7d993 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5189,6 +5189,49 @@ (define-public python-cwl-upgrader
and v1.1 to v1.2.")
(license license:asl2.0)))
+(define-public python-cwl-utils
+ (package
+ (name "python-cwl-utils")
+ (version "0.32")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "cwl-utils" version))
+ (sha256
+ (base32
+ "06wkw8d8cqm3hnz8xwnysz874gwaym36c358cr7frw5iglhvsj98"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ #~(list "-k"
+ (string-append "not test_graph_split"
+ " and not test_load_document_with_remote_uri"
+ " and not test_remote_packing"
+ " and not test_remote_packing_github_soft_links"
+ " and not test_value_from_two_concatenated_expressions"))))
+ (inputs
+ (list node))
+ (native-inputs
+ (list python-mypy-extensions
+ python-pytest
+ python-pytest-mock
+ python-pytest-runner))
+ (propagated-inputs
+ (list python-cwl-upgrader
+ python-cwlformat
+ python-packaging
+ python-rdflib
+ python-requests
+ python-ruamel.yaml
+ python-schema-salad))
+ (home-page "https://github.com/common-workflow-language/cwl-utils")
+ (synopsis "Python utilities for CWL")
+ (description "@code{python-cwl-utils} provides python utilities and
+autogenerated classes for loading and parsing CWL v1.0, CWL v1.1, and CWL v1.2
+documents.")
+ (license license:asl2.0)))
+
(define-public cwltool
(package
(name "cwltool")
--
2.41.0
next prev parent reply other threads:[~2024-02-15 20:48 UTC|newest]
Thread overview: 21+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-10-22 22:27 [bug#66690] [PATCH 0/7] Upgrade cwltool Arun Isaac
2023-10-23 8:09 ` [bug#66690] [PATCH 1/7] gnu: python-ruamel.yaml.clib: Update to 0.2.7 Arun Isaac
2023-10-23 8:09 ` [bug#66690] [PATCH 2/7] gnu: python-ruamel.yaml: Update to 0.17.40 Arun Isaac
2023-10-23 8:09 ` [bug#66690] [PATCH 3/7] gnu: python-schema-salad: Update to 8.4.20230927144413 Arun Isaac
2023-10-23 8:09 ` [bug#66690] [PATCH 4/7] gnu: Add python-cwlformat Arun Isaac
2023-10-23 8:09 ` [bug#66690] [PATCH 5/7] gnu: Add python-cwl-upgrader Arun Isaac
2023-10-23 8:09 ` [bug#66690] [PATCH 6/7] gnu: Add python-cwl-utils Arun Isaac
2023-10-23 8:09 ` [bug#66690] [PATCH 7/7] gnu: cwltool: Update to 3.1.20230601100705 Arun Isaac
2023-11-22 14:37 ` [bug#66690] [PATCH 0/7] Upgrade cwltool Ludovic Courtès
2023-11-23 0:35 ` Arun Isaac
2024-02-15 20:46 ` [bug#66690] [PATCH v2 0/8] " Arun Isaac
2024-02-15 20:46 ` [bug#66690] [PATCH v2 1/8] gnu: python-ruamel.yaml.clib: Update to 0.2.8 Arun Isaac
2024-02-15 20:46 ` [bug#66690] [PATCH v2 2/8] gnu: python-ruamel-yaml: Update to 0.18.6 Arun Isaac
2024-02-15 20:46 ` [bug#66690] [PATCH v2 3/8] gnu: python-schema-salad: Update to 8.5.20240102191335 Arun Isaac
2024-02-15 20:46 ` [bug#66690] [PATCH v2 4/8] gnu: Add python-cwlformat Arun Isaac
2024-02-15 20:46 ` [bug#66690] [PATCH v2 5/8] gnu: Add python-cwl-upgrader Arun Isaac
2024-02-15 20:46 ` Arun Isaac [this message]
2024-02-15 20:46 ` [bug#66690] [PATCH v2 7/8] gnu: Add python-spython Arun Isaac
2024-02-15 20:46 ` [bug#66690] [PATCH v2 8/8] gnu: cwltool: Update to 3.1.20240112164112 Arun Isaac
2024-02-18 22:39 ` [bug#66690] [PATCH v2 0/8] Upgrade cwltool Ludovic Courtès
2024-02-22 13:16 ` bug#66690: " Arun Isaac
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