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From: Arun Isaac <arunisaac@systemreboot.net>
To: 66690@debbugs.gnu.org
Cc: "Arun Isaac" <arunisaac@systemreboot.net>,
	"Arun Isaac" <arunisaac@systemreboot.net>,
	"Ludovic Courtès" <ludo@gnu.org>
Subject: [bug#66690] [PATCH v2 6/8] gnu: Add python-cwl-utils.
Date: Thu, 15 Feb 2024 20:46:23 +0000	[thread overview]
Message-ID: <ade7517f3e3c36a1cafe0b6fbe05df7a08aa96c2.1708029746.git.arunisaac@systemreboot.net> (raw)
In-Reply-To: <cover.1708029746.git.arunisaac@systemreboot.net>

* gnu/packages/bioinformatics.scm (python-cwl-utils): New variable.

Change-Id: I9347c80c0e866b89a7d432091fbcf1bc009209a5
---
 gnu/packages/bioinformatics.scm | 43 +++++++++++++++++++++++++++++++++
 1 file changed, 43 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 438b22800c..35c4d7d993 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5189,6 +5189,49 @@ (define-public python-cwl-upgrader
 and v1.1 to v1.2.")
     (license license:asl2.0)))
 
+(define-public python-cwl-utils
+  (package
+    (name "python-cwl-utils")
+    (version "0.32")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "cwl-utils" version))
+       (sha256
+        (base32
+         "06wkw8d8cqm3hnz8xwnysz874gwaym36c358cr7frw5iglhvsj98"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      #~(list "-k"
+              (string-append "not test_graph_split"
+                             " and not test_load_document_with_remote_uri"
+                             " and not test_remote_packing"
+                             " and not test_remote_packing_github_soft_links"
+                             " and not test_value_from_two_concatenated_expressions"))))
+    (inputs
+     (list node))
+    (native-inputs
+     (list python-mypy-extensions
+           python-pytest
+           python-pytest-mock
+           python-pytest-runner))
+    (propagated-inputs
+     (list python-cwl-upgrader
+           python-cwlformat
+           python-packaging
+           python-rdflib
+           python-requests
+           python-ruamel.yaml
+           python-schema-salad))
+    (home-page "https://github.com/common-workflow-language/cwl-utils")
+    (synopsis "Python utilities for CWL")
+    (description "@code{python-cwl-utils} provides python utilities and
+autogenerated classes for loading and parsing CWL v1.0, CWL v1.1, and CWL v1.2
+documents.")
+    (license license:asl2.0)))
+
 (define-public cwltool
   (package
     (name "cwltool")
-- 
2.41.0





  parent reply	other threads:[~2024-02-15 20:48 UTC|newest]

Thread overview: 21+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2023-10-22 22:27 [bug#66690] [PATCH 0/7] Upgrade cwltool Arun Isaac
2023-10-23  8:09 ` [bug#66690] [PATCH 1/7] gnu: python-ruamel.yaml.clib: Update to 0.2.7 Arun Isaac
2023-10-23  8:09 ` [bug#66690] [PATCH 2/7] gnu: python-ruamel.yaml: Update to 0.17.40 Arun Isaac
2023-10-23  8:09 ` [bug#66690] [PATCH 3/7] gnu: python-schema-salad: Update to 8.4.20230927144413 Arun Isaac
2023-10-23  8:09 ` [bug#66690] [PATCH 4/7] gnu: Add python-cwlformat Arun Isaac
2023-10-23  8:09 ` [bug#66690] [PATCH 5/7] gnu: Add python-cwl-upgrader Arun Isaac
2023-10-23  8:09 ` [bug#66690] [PATCH 6/7] gnu: Add python-cwl-utils Arun Isaac
2023-10-23  8:09 ` [bug#66690] [PATCH 7/7] gnu: cwltool: Update to 3.1.20230601100705 Arun Isaac
2023-11-22 14:37 ` [bug#66690] [PATCH 0/7] Upgrade cwltool Ludovic Courtès
2023-11-23  0:35   ` Arun Isaac
2024-02-15 20:46 ` [bug#66690] [PATCH v2 0/8] " Arun Isaac
2024-02-15 20:46   ` [bug#66690] [PATCH v2 1/8] gnu: python-ruamel.yaml.clib: Update to 0.2.8 Arun Isaac
2024-02-15 20:46   ` [bug#66690] [PATCH v2 2/8] gnu: python-ruamel-yaml: Update to 0.18.6 Arun Isaac
2024-02-15 20:46   ` [bug#66690] [PATCH v2 3/8] gnu: python-schema-salad: Update to 8.5.20240102191335 Arun Isaac
2024-02-15 20:46   ` [bug#66690] [PATCH v2 4/8] gnu: Add python-cwlformat Arun Isaac
2024-02-15 20:46   ` [bug#66690] [PATCH v2 5/8] gnu: Add python-cwl-upgrader Arun Isaac
2024-02-15 20:46   ` Arun Isaac [this message]
2024-02-15 20:46   ` [bug#66690] [PATCH v2 7/8] gnu: Add python-spython Arun Isaac
2024-02-15 20:46   ` [bug#66690] [PATCH v2 8/8] gnu: cwltool: Update to 3.1.20240112164112 Arun Isaac
2024-02-18 22:39   ` [bug#66690] [PATCH v2 0/8] Upgrade cwltool Ludovic Courtès
2024-02-22 13:16     ` bug#66690: " Arun Isaac

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