[bug#32700]

[bug#32700]

[MadalinIonel.Patrascu]

Mădălin Ionel Patrașcu

System Administrator
Bioinformatics Platform
The Berlin Institute for Medical Systems Biology (BIMSB)
Max Delbrück Center (MDC)
Robert-Rössle-Straße 10
House 87, room 1.10
13125 Berlin, Germany

[bug#32700] [PATCH 1/3] gnu: Add r-rbenchmark.

[pimi]

gnu/packages/cran.scm (r-rbenchmark): New variable.
---
 gnu/packages/cran.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 7621b3bb6..aada8acce 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5797,3 +5797,28 @@ on user-defined cut-points of accelerometer counts.
 and generates data summaries.  Also, includes functions to plot, analyze, and
 simulate accelerometer data.")
     (license license:gpl2+)))
+
+(define-public r-rbenchmark
+  (package
+    (name "r-rbenchmark")
+    (version "1.0.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "rbenchmark" version))
+       (sha256
+        (base32 "010fn3qwnk2k411cbqyvra1d12c3bhhl3spzm8kxffmirj4p2al9"))))
+    (build-system r-build-system)
+    (home-page "https://cran.r-project.org/web/packages/rbenchmark/")
+    (synopsis "Benchmarking routine for R")
+    (description
+     "This @code{r-rbenchmark} package is inspired by the Perl module Benchmark,
+and is intended to facilitate benchmarking of arbitrary R code.  The library
+consists of just one function, benchmark, which is a simple wrapper around
+system.time.  Given a specification of the benchmarking process (counts of
+replications, evaluation environment) and an arbitrary number of expressions,
+benchmark evaluates each of the expressions in the specified environment,
+replicating the evaluation as many times as specified, and returning the results
+conveniently wrapped into a data frame.")
+    (license license:gpl2+)))
+
-- 
2.17.1

[bug#32700] [PATCH 2/3] gnu: Add r-dvmisc.

[pimi]

gnu/packages/cran.scm (r-dvmisc): New variable.
---
 gnu/packages/cran.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index aada8acce..f4ca7778e 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5822,3 +5822,28 @@ replicating the evaluation as many times as specified, and returning the results
 conveniently wrapped into a data frame.")
     (license license:gpl2+)))
 
+(define-public r-dvmisc
+  (package
+    (name "r-dvmisc")
+    (version "1.1.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "dvmisc" version))
+       (sha256
+        (base32 "1dy0yykskwhkql19bhzmbwsgv028afc8jh9yqwbczj6f3vpv31zh"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-mass" ,r-mass)
+       ("r-rbenchmark" ,r-rbenchmark)
+       ("r-rcpp" ,r-rcpp)))
+    (home-page "https://cran.r-project.org/web/packages/dvmisc/")
+    (synopsis "Faster computation of common statistics and miscellaneous functions")
+    (description
+     "This package implements faster versions of base R functions (e.g. mean, standard
+deviation, covariance, weighted mean), mostly written in C++, along with
+miscellaneous functions for various purposes (e.g. create the histogram with
+fitted probability density function or probability mass function curve, create
+the body mass index groups, assess the linearity assumption in logistic
+regression).")
+    (license license:gpl2)))
-- 
2.17.1

[bug#32700] [PATCH 3/3] gnu: Add r-accelerometry.

[pimi]

gnu/packages/cran.scm (r-accelerometry): New variable.
---
 gnu/packages/cran.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index f4ca7778e..0f39080b3 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5847,3 +5847,27 @@ fitted probability density function or probability mass function curve, create
 the body mass index groups, assess the linearity assumption in logistic
 regression).")
     (license license:gpl2)))
+
+(define-public r-accelerometry
+  (package
+    (name "r-accelerometry")
+    (version "3.1.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "accelerometry" version))
+       (sha256
+        (base32 "13xzrwhr4i1nj9c8vrmfdg2rmrc8n446iihcyxmy99sm99hpzyip"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-dvmisc" ,r-dvmisc)
+       ("r-rcpp" ,r-rcpp)))
+    (home-page "https://cran.r-project.org/web/packages/accelerometry/")
+    (synopsis "Functions for processing accelerometer data")
+    (description
+     "This package provides a collection of functions that perform operations on
+time-series accelerometer data, such as identify the non-wear time, flag minutes
+that are part of an activity bout, and find the maximum 10-minute average count
+value.  The functions are generally very flexible, allowing for a variety of
+algorithms to be implemented.")
+    (license license:gpl3)))
-- 
2.17.1

bug#32700: [PATCH 1/3] gnu: Add r-rbenchmark.

[Leo Famulari]

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On Tue, Sep 11, 2018 at 03:18:25PM +0200, pimi wrote:
> gnu/packages/cran.scm (r-rbenchmark): New variable.

Thanks! I pushed the patch series as
d8d8844ec12c017480e83cd541e98b55e18a17f4

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