* [bug#65530] [PATCH] gnu: r-classdiscovery: Update to 3.4.0. @ 2023-08-25 11:15 Navid Afkhami 2023-08-28 12:34 ` [bug#65530] [PATCH] gnu: Add r-classdiscovery Navid Afkhami 2023-08-28 15:10 ` bug#65530: [PATCH] gnu: r-classdiscovery: Update to 3.4.0 Ricardo Wurmus 0 siblings, 2 replies; 3+ messages in thread From: Navid Afkhami @ 2023-08-25 11:15 UTC (permalink / raw) To: 65530; +Cc: Navid Afkhami * gnu/packages/cran.scm (r-classdiscovery): Update to 3.4.0. --- gnu/packages/cran.scm | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 43a9e11fea..9226805717 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -66,6 +66,7 @@ (define-module (gnu packages cran) #:use-module (gnu packages algebra) #:use-module (gnu packages autotools) #:use-module (gnu packages base) + #:use-module (gnu packages bioconductor) #:use-module (gnu packages bioinformatics) #:use-module (gnu packages c) #:use-module (gnu packages compression) @@ -1630,7 +1631,7 @@ (define-public r-classdiscovery (synopsis "Classes and methods for \"Class Discovery\" with microarrays or proteomics") (description - "This package defines classes for \"class discovery\" in OOMPA project. + "This package defines classes for \"class discovery\" in OOMPA project. Class discovery primarily consists of unsupervised clustering methods with attempts to assess their statistical significance.") (license license:asl2.0))) base-commit: 1c916c167b7eb1f2f8af2cf621aa1512b00b1033 prerequisite-patch-id: ab9aad8c0ca60c38323f24b41dd3d5b1c3286e10 prerequisite-patch-id: c57cd1d51559f364cccdc54030deb28d7692bf48 prerequisite-patch-id: fbceb485e63c38a57a5c46288287479afe028191 -- 2.34.1 ^ permalink raw reply related [flat|nested] 3+ messages in thread
* [bug#65530] [PATCH] gnu: Add r-classdiscovery. 2023-08-25 11:15 [bug#65530] [PATCH] gnu: r-classdiscovery: Update to 3.4.0 Navid Afkhami @ 2023-08-28 12:34 ` Navid Afkhami 2023-08-28 15:10 ` bug#65530: [PATCH] gnu: r-classdiscovery: Update to 3.4.0 Ricardo Wurmus 1 sibling, 0 replies; 3+ messages in thread From: Navid Afkhami @ 2023-08-28 12:34 UTC (permalink / raw) To: 65530; +Cc: Navid Afkhami * gnu/packages/bioconductor.scm (r-classdiscovery): New variable. --- gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 0e01f3115d..81fe723779 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -13924,6 +13924,31 @@ (define-public r-enrichplot All the visualization methods are developed based on ggplot2 graphics.") (license license:artistic2.0))) +;; This is a CRAN package, but it depends on Bioconductor packages and module. +;; That is why we added it here! +(define-public r-classdiscovery + (package + (name "r-classdiscovery") + (version "3.4.0") + (source (origin + (method url-fetch) + (uri (cran-uri "ClassDiscovery" version)) + (sha256 + (base32 + "06l7jvpcdynij05hb0ka33zpg7xdyqyzfzx24s0bnlspp83yc62s")))) + (properties `((upstream-name . "ClassDiscovery"))) + (build-system r-build-system) + (propagated-inputs (list r-biobase r-cluster r-mclust r-oompabase + r-oompadata)) + (home-page "http://oompa.r-forge.r-project.org/") + (synopsis + "Classes and Methods for \"Class Discovery\" with Microarrays or Proteomics") + (description + "This package defines classes for \"class discovery\" in OOMPA project. +Class discovery primarily consists of unsupervised clustering methods +with attempts to assess their statistical significance.") + (license license:asl2.0))) + (define-public r-clusterprofiler (package (name "r-clusterprofiler") base-commit: 4a49a89b09d07d96f4d6ef3c0ca93801370f7b20 -- 2.34.1 ^ permalink raw reply related [flat|nested] 3+ messages in thread
* bug#65530: [PATCH] gnu: r-classdiscovery: Update to 3.4.0. 2023-08-25 11:15 [bug#65530] [PATCH] gnu: r-classdiscovery: Update to 3.4.0 Navid Afkhami 2023-08-28 12:34 ` [bug#65530] [PATCH] gnu: Add r-classdiscovery Navid Afkhami @ 2023-08-28 15:10 ` Ricardo Wurmus 1 sibling, 0 replies; 3+ messages in thread From: Ricardo Wurmus @ 2023-08-28 15:10 UTC (permalink / raw) To: 65530-done Thanks for the corrected patch. I’ve applied it. -- Ricardo ^ permalink raw reply [flat|nested] 3+ messages in thread
end of thread, other threads:[~2023-08-28 15:12 UTC | newest] Thread overview: 3+ messages (download: mbox.gz / follow: Atom feed) -- links below jump to the message on this page -- 2023-08-25 11:15 [bug#65530] [PATCH] gnu: r-classdiscovery: Update to 3.4.0 Navid Afkhami 2023-08-28 12:34 ` [bug#65530] [PATCH] gnu: Add r-classdiscovery Navid Afkhami 2023-08-28 15:10 ` bug#65530: [PATCH] gnu: r-classdiscovery: Update to 3.4.0 Ricardo Wurmus
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