* [bug#63447] [PATCH] gnu: Add r-dropletutils.
@ 2023-05-11 16:30 Mădălin Ionel Patrașcu
2023-05-12 7:36 ` bug#63447: " Ricardo Wurmus
0 siblings, 1 reply; 2+ messages in thread
From: Mădălin Ionel Patrașcu @ 2023-05-11 16:30 UTC (permalink / raw)
To: 63447; +Cc: rekado
* gnu/packages/bioconductor.scm (r-dropletutils): New variable.
---
gnu/packages/bioconductor.scm | 44 +++++++++++++++++++++++++++++++++++
1 file changed, 44 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index cb441655eb..b54585e97f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4897,6 +4897,50 @@ (define-public r-drimseq
results.")
(license license:gpl3+)))
+(define-public r-dropletutils
+ (package
+ (name "r-dropletutils")
+ (version "1.20.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "DropletUtils" version))
+ (sha256
+ (base32 "09xwfb4ihpsp465vb1zbcwm6ww6qi3spn9d8p4i1gczyc0p9pf1y"))))
+ (properties `((upstream-name . "DropletUtils")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-beachmat
+ r-bh
+ r-biocgenerics
+ r-biocparallel
+ r-delayedarray
+ r-delayedmatrixstats
+ r-dqrng
+ r-edger
+ r-genomicranges
+ r-hdf5array
+ r-iranges
+ r-matrix
+ r-r-utils
+ r-rcpp
+ r-rhdf5
+ r-rhdf5lib
+ r-s4vectors
+ r-scuttle
+ r-singlecellexperiment
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/DropletUtils")
+ (synopsis "Utilities for handling single-cell droplet data")
+ (description
+ "This package provides a number of utility functions for handling
+single-cell (RNA-seq) data from droplet technologies such as 10X Genomics.
+This includes data loading from count matrices or molecule information files,
+identification of cells from empty droplets, removal of barcode-swapped pseudo-
+cells, and downsampling of the count matrix.")
+ (license license:gpl3)))
+
(define-public r-dss
(package
(name "r-dss")
base-commit: e2eb43f945fd467e9b55a4b3c91cd186cf32e268
--
2.39.2
^ permalink raw reply related [flat|nested] 2+ messages in thread
* bug#63447: [PATCH] gnu: Add r-dropletutils.
2023-05-11 16:30 [bug#63447] [PATCH] gnu: Add r-dropletutils Mădălin Ionel Patrașcu
@ 2023-05-12 7:36 ` Ricardo Wurmus
0 siblings, 0 replies; 2+ messages in thread
From: Ricardo Wurmus @ 2023-05-12 7:36 UTC (permalink / raw)
To: Mădălin Ionel Patrașcu; +Cc: 63447-done
Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:
> * gnu/packages/bioconductor.scm (r-dropletutils): New variable.
Applied, thanks!
--
Ricardo
^ permalink raw reply [flat|nested] 2+ messages in thread
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2023-05-11 16:30 [bug#63447] [PATCH] gnu: Add r-dropletutils Mădălin Ionel Patrașcu
2023-05-12 7:36 ` bug#63447: " Ricardo Wurmus
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