* [bug#51461] [PATCH] gnu: Add r-zellkonverter.
@ 2021-10-28 15:12 Mădălin Ionel Patrașcu
2021-11-01 22:23 ` bug#51461: " Ricardo Wurmus
0 siblings, 1 reply; 2+ messages in thread
From: Mădălin Ionel Patrașcu @ 2021-10-28 15:12 UTC (permalink / raw)
To: 51461; +Cc: rekado, Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-zellkonverter): New variable.
---
gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++
1 file changed, 32 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 90a0e1f288..ce3a4badce 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4682,6 +4682,38 @@ (define-public r-zlibbioc
libraries for systems that do not have these available via other means.")
(license license:artistic2.0)))
+(define-public r-zellkonverter
+ (package
+ (name "r-zellkonverter")
+ (version "1.4.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "zellkonverter" version))
+ (sha256
+ (base32 "1ihp2f23lpdfgf3qliy22vrq8czm353hyhqf74r5r712190k6pgg"))))
+ (properties `((upstream-name . "zellkonverter")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-basilisk" ,r-basilisk)
+ ("r-cli" ,r-cli)
+ ("r-delayedarray" ,r-delayedarray)
+ ("r-matrix" ,r-matrix)
+ ("r-reticulate" ,r-reticulate)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-singlecellexperiment" ,r-singlecellexperiment)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/theislab/zellkonverter")
+ (synopsis "Conversion between AnnData and single-cell experiments objects")
+ (description
+ "This package provides methods to convert between Python AnnData objects
+and SingleCellExperiment objects. These are primarily intended for use by
+downstream Bioconductor packages that wrap Python methods for single-cell data
+analysis. It also includes functions to read and write H5AD files used for
+saving AnnData objects to disk.")
+ (license license:expat)))
+
(define-public r-geneplotter
(package
(name "r-geneplotter")
--
2.33.0
^ permalink raw reply related [flat|nested] 2+ messages in thread
* bug#51461: [PATCH] gnu: Add r-zellkonverter.
2021-10-28 15:12 [bug#51461] [PATCH] gnu: Add r-zellkonverter Mădălin Ionel Patrașcu
@ 2021-11-01 22:23 ` Ricardo Wurmus
0 siblings, 0 replies; 2+ messages in thread
From: Ricardo Wurmus @ 2021-11-01 22:23 UTC (permalink / raw)
To: 51461-done
Applied and pushed to the “r-updates” branch, which will shortly
be merged into the “master” branch.
--
Ricardo
^ permalink raw reply [flat|nested] 2+ messages in thread
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2021-10-28 15:12 [bug#51461] [PATCH] gnu: Add r-zellkonverter Mădălin Ionel Patrașcu
2021-11-01 22:23 ` bug#51461: " Ricardo Wurmus
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