* [bug#59672] [PATCH] gnu: Add r-metaneighbor.
@ 2022-11-29 8:00 Mădălin Ionel Patrașcu
2022-12-01 10:50 ` bug#59672: " Ricardo Wurmus
0 siblings, 1 reply; 2+ messages in thread
From: Mădălin Ionel Patrașcu @ 2022-11-29 8:00 UTC (permalink / raw)
To: 59672; +Cc: rekado
* gnu/packages/bioconductor.scm (r-metaneighbor): New variable.
---
gnu/packages/bioconductor.scm | 36 +++++++++++++++++++++++++++++++++++
1 file changed, 36 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 39c9c6f809..c3e0548b45 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6010,6 +6010,42 @@ (define-public r-made4
datasets (coinertia analysis).")
(license license:artistic2.0)))
+(define-public r-metaneighbor
+ (package
+ (name "r-metaneighbor")
+ (version "1.18.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "MetaNeighbor" version))
+ (sha256
+ (base32
+ "1gjjp5qlmv26sd3fvrd8cgv3invckxr8ldjpizpqm4mxjzifxwpm"))))
+ (properties `((upstream-name . "MetaNeighbor")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-beanplot
+ r-dplyr
+ r-ggplot2
+ r-gplots
+ r-igraph
+ r-matrix
+ r-matrixstats
+ r-rcolorbrewer
+ r-singlecellexperiment
+ r-summarizedexperiment
+ r-tibble
+ r-tidyr))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/MetaNeighbor")
+ (synopsis "Single cell replicability analysis")
+ (description
+ "This package implements a method to rapidly assess cell type identity using
+both functional and random gene sets and it allows users to quantify cell type
+replicability across datasets using neighbor voting. @code{MetaNeighbor} works
+on the basis that cells of the same type should have more similar gene expression
+profiles than cells of different types.")
+ (license license:expat)))
+
(define-public r-methylkit
(package
(name "r-methylkit")
base-commit: 3578fb1323db3f0eadd5749e51095e5f196d78c7
--
2.38.1
^ permalink raw reply related [flat|nested] 2+ messages in thread
* bug#59672: [PATCH] gnu: Add r-metaneighbor.
2022-11-29 8:00 [bug#59672] [PATCH] gnu: Add r-metaneighbor Mădălin Ionel Patrașcu
@ 2022-12-01 10:50 ` Ricardo Wurmus
0 siblings, 0 replies; 2+ messages in thread
From: Ricardo Wurmus @ 2022-12-01 10:50 UTC (permalink / raw)
To: 59672-done
Applied, thanks!
--
Ricardo
^ permalink raw reply [flat|nested] 2+ messages in thread
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2022-11-29 8:00 [bug#59672] [PATCH] gnu: Add r-metaneighbor Mădălin Ionel Patrașcu
2022-12-01 10:50 ` bug#59672: " Ricardo Wurmus
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