* [bug#68371] [PATCH] gnu: Add r-jaspar2020.
@ 2024-01-10 14:22 nafkhamdc
2024-01-10 17:50 ` bug#68371: " Ricardo Wurmus
0 siblings, 1 reply; 2+ messages in thread
From: nafkhamdc @ 2024-01-10 14:22 UTC (permalink / raw)
To: 68371; +Cc: nafkhamdc
* gnu/packages/bioconductor.scm (r-jaspar2020): New variable.
Change-Id: I84f0fc2a7defc5d179ffc24aa1f30177cb3b3060
---
gnu/packages/bioconductor.scm | 21 +++++++++++++++++++++
1 file changed, 21 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 7c4272f8be..e4021fe756 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6003,6 +6003,27 @@ (define-public r-deconstructsigs
closely reconstructs the mutational profile.")
(license license:gpl2+)))
+(define-public r-jaspar2020
+ (package
+ (name "r-jaspar2020")
+ (version "0.99.10")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "JASPAR2020" version
+ 'annotation))
+ (sha256
+ (base32 "0nrp63z7q2ivv5h87f7inpp2qll2dfgj4227l4rbnzii38a2vfdr"))))
+ (properties `((upstream-name . "JASPAR2020")))
+ (build-system r-build-system)
+ (native-inputs (list r-knitr))
+ (home-page "https://jaspar.elixir.no/")
+ (synopsis "Data package for JASPAR database (version 2020)")
+ (description "Data package for JASPAR2020.
+To explore these databases, utilize the TFBSTools
+package (version 1.23.1 or higher).")
+ (license license:gpl2)))
+
;; This is a CRAN package, but it depends on Bioconductor packages.
(define-public r-jetset
(package
base-commit: 537768018ee03a6a9a5562022a16b47ac287d131
prerequisite-patch-id: 103e1e7922398cbadee6250d96974c6b8ca89fdb
--
2.34.1
^ permalink raw reply related [flat|nested] 2+ messages in thread
* bug#68371: [PATCH] gnu: Add r-jaspar2020.
2024-01-10 14:22 [bug#68371] [PATCH] gnu: Add r-jaspar2020 nafkhamdc
@ 2024-01-10 17:50 ` Ricardo Wurmus
0 siblings, 0 replies; 2+ messages in thread
From: Ricardo Wurmus @ 2024-01-10 17:50 UTC (permalink / raw)
To: 68371-done
Applied, thanks! Note that I moved this to the Annotations section at
the beginning of the file.
--
Ricardo
^ permalink raw reply [flat|nested] 2+ messages in thread
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2024-01-10 17:50 ` bug#68371: " Ricardo Wurmus
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