* [bug#63976] [PATCH] gnu: Add python-mudata.
@ 2023-06-09 14:56 Navid Afkhami
2023-06-09 15:09 ` bug#63976: " Ricardo Wurmus
0 siblings, 1 reply; 2+ messages in thread
From: Navid Afkhami @ 2023-06-09 14:56 UTC (permalink / raw)
To: 63976; +Cc: Navid Afkhami
* gnu/packages/bioinformatics.scm (python-mudata): New variable.
---
gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1caea80f86..13ae47d858 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3352,6 +3352,32 @@ (define-public python-mofax
models trained with MOFA+ in Python.")
(license license:expat))))
+(define-public python-mudata
+ (let ((commit "392f5464135d687fe64bc571d35cbf557b796ff0")
+ (revision "0"))
+ (package
+ (name "python-mudata")
+ (version (git-version "0.2.3" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/scverse/mudata")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "02h0k1q57589r0hdv8nwg1vk7g2ljvn5g66c47fy5gdilbm3gjws"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs (list python-anndata python-h5py python-pandas python-flit-core))
+ (native-inputs (list python-numpy python-pytest python-zarr))
+ (home-page "https://github.com/scverse/mudata")
+ (synopsis "Python package for multi-omics data analysis")
+ (description
+ "Mudata is a Python package for multi-omics data analysis.
+It is designed to provide functionality to load, process, and store
+multimodal omics data.")
+ (license license:bsd-3))))
+
(define-public python-pyega3
(package
(name "python-pyega3")
base-commit: dd587a4fefbd8841f609910af36e13aa890781b7
prerequisite-patch-id: c5352e197d46cff8e37f0ff85044983c550a9663
--
2.34.1
^ permalink raw reply related [flat|nested] 2+ messages in thread
* bug#63976: [PATCH] gnu: Add python-mudata.
2023-06-09 14:56 [bug#63976] [PATCH] gnu: Add python-mudata Navid Afkhami
@ 2023-06-09 15:09 ` Ricardo Wurmus
0 siblings, 0 replies; 2+ messages in thread
From: Ricardo Wurmus @ 2023-06-09 15:09 UTC (permalink / raw)
To: 63976-done
I simplified this a little and pushed this with commit
74443c30f3e20655a046c0d3ea236822ef130968.
Thank you!
--
Ricardo
^ permalink raw reply [flat|nested] 2+ messages in thread
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2023-06-09 14:56 [bug#63976] [PATCH] gnu: Add python-mudata Navid Afkhami
2023-06-09 15:09 ` bug#63976: " Ricardo Wurmus
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