[bug#54620] [PATCH 3/3] Add r-rnaseqdtu

["Hong.Li@mdc-berlin.de" <Hong.Li@mdc-berlin.de>]

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From fdd03ffe8b0db96f4ba662c0367a012267659a30 Mon Sep 17 00:00:00 2001
From: "Li, Hong" <hong.li@mdc-berlin.de>
Date: Mon, 28 Mar 2022 11:44:35 +0200
Subject: [PATCH 3/3] Add r-rnaseqdtu

---
 gnu/packages/bioinformatics.scm | 37 +++++++++++++++++++++++++++++++++
 1 file changed, 37 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ada5965e5f..c79d4ad82d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9009,6 +9009,43 @@ for analyzing gene-level association tests in meta-analyses for binary
 trait.")
     (license license:gpl3)))
 
+(define-public r-rnaseqdtu
+  (let ((commit "5bee1e769d2e1dc6a3f1cecb78078050eeb5b9ac") (revision "1"))
+    (package
+      (name "r-rnaseqdtu")
+      (version (git-version "2.0" revision commit))
+      (source
+        (origin
+          (method git-fetch)
+          (uri (git-reference
+                 (url "https://github.com/mikelove/rnaseqDTU/")
+                 (commit commit)))
+          (file-name (git-file-name name version))
+          (sha256
+            (base32 "0jfi1ydsk8m5nadwnih48v87nnxdc7s3f0pny4axmnj40dd42as0"))))
+      (properties `((upstream-name . "rnaseqDTU")))
+      (build-system r-build-system)
+      (propagated-inputs
+        (list r-deseq2
+              r-devtools
+              r-dexseq
+              r-drimseq
+              r-edger
+              r-rafalib
+              r-stager))
+      (native-inputs (list r-knitr))
+      (home-page "https://github.com/mikelove/rnaseqDTU/")
+      (synopsis
+        "RNA-seq workflow for differential transcript usage following Salmon quantification")
+      (description
+        "RNA-seq workflow for differential transcript usage (DTU) following Salmon
+quantification.  This workflow uses Bioconductor packages tximport, DRIMSeq, and
+DEXSeq to perform a DTU analysis on simulated data.  It also shows how to use
+stageR to perform two-stage testing of DTU, a statistical framework to screen at
+the gene level and then confirm which transcripts within the significant genes
+show evidence of DTU.")
+      (license license:artistic2.0))))
+
 (define-public r-dropbead
   (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
         (revision "2"))
-- 
2.26.1