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* [bug#54511] [PATCH] gnu: Add r-cytobackbone.
@ 2022-03-21 19:19 Mădălin Ionel Patrașcu
  2022-03-21 20:17 ` Maxime Devos
                   ` (4 more replies)
  0 siblings, 5 replies; 9+ messages in thread
From: Mădălin Ionel Patrașcu @ 2022-03-21 19:19 UTC (permalink / raw)
  To: 54511

* gnu/packages/bioconductor.scm (r-cytobackbone): New variable.
---
 gnu/packages/bioconductor.scm | 38 +++++++++++++++++++++++++++++++++++
 1 file changed, 38 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 55d397e5cf..6f5a040f65 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -10066,6 +10066,44 @@ (define-public r-consensusclusterplus
 cluster count and membership by stability evidence in unsupervised analysis.")
     (license license:gpl2)))
 
+;; It doesn't have a system of releases. This package depends on a bioconductor
+;; input.
+(define-public r-cytobackbone
+  (let ((commit "4c1a0a35cc5ae1f8f516127cec92351d96fe26e7") (revision "1"))
+    (package
+      (name "r-cytobackbone")
+      (version (git-version "1.0.0" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/tchitchek-lab/CytoBackBone")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "0ahiad14zcgdk42xzw5xryic2ibn2l8lkrcdvl2b5sz2js028yb3"))))
+      (properties `((upstream-name #{.}# "CytoBackBone")))
+      (build-system r-build-system)
+      (propagated-inputs (list r-flowcore r-flowutils r-fnn r-ggplot2
+                               r-preprocesscore))
+      (native-inputs (list r-knitr))
+      (home-page "https://github.com/tchitchek-lab/CytoBackBone")
+      (synopsis
+       "Merging of phenotype information from different cytometric profiles")
+      (description
+       "Single-cell technologies are the most suitable techniques for the
+characterization of cells by the differential expression of the molecules that
+define their roles and functions in tissues.  Among these techniques, mass
+cytometry represents a leap forward by increasing the number of available
+measurements to approximately 40 cell markers.  Thanks to this technology,
+detailed immune responses were described in several diseases.  However, the
+study of immune responses, such as that due to viral infections or auto-immune
+diseases, could be further improved by increasing the number of simultaneously
+measurable markers.  To increase this number, we designed an algorithm, named
+@code{CytoBackBone}, which combines phenotypic information of different
+cytometric profiles obtained from different cytometry panels.")
+      (license license:gpl2))))
+
 (define-public r-cytolib
   (package
     (name "r-cytolib")
-- 
2.34.0





^ permalink raw reply related	[flat|nested] 9+ messages in thread
end of thread, other threads:[~2022-03-29 13:04 UTC | newest]

Thread overview: 9+ messages (download: mbox.gz / follow: Atom feed)
-- links below jump to the message on this page --
2022-03-21 19:19 [bug#54511] [PATCH] gnu: Add r-cytobackbone Mădălin Ionel Patrașcu
2022-03-21 20:17 ` Maxime Devos
2022-03-22  9:39   ` [bug#54511] [ext] " MadalinIonel.Patrascu
2022-03-21 20:17 ` Maxime Devos
2022-03-22  9:41   ` [bug#54511] [ext] " MadalinIonel.Patrascu
2022-03-21 20:19 ` Maxime Devos
2022-03-22  9:53   ` [bug#54511] [ext] " MadalinIonel.Patrascu
2022-03-22 10:34 ` Mădălin Ionel Patrașcu
2022-03-29 13:02 ` bug#54511: " Ricardo Wurmus

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