From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <62297@debbugs.gnu.org>
Cc: rekado@elephly.net
Subject: [bug#62297] [PATCH 2/5] gnu: Add r-affyplm.
Date: Mon, 20 Mar 2023 17:00:02 +0100 [thread overview]
Message-ID: <20230320160005.1594550-2-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <20230320160005.1594550-1-madalinionel.patrascu@mdc-berlin.de>
* gnu/packages/bioconductor.scm (r-affyplm): New variable.
---
gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 48aa426574..1e3753b2ec 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2124,6 +2124,36 @@ (define-public r-affyilm
of the Langmuir model.")
(license license:gpl3)))
+(define-public r-affyplm
+ (package
+ (name "r-affyplm")
+ (version "1.74.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "affyPLM" version))
+ (sha256
+ (base32 "0f0faxjzlg0znhjfvf1490yc54npkx659jx76cddm5hk7q0blv3v"))))
+ (properties `((upstream-name . "affyPLM")))
+ (build-system r-build-system)
+ (inputs (list zlib))
+ (propagated-inputs
+ (list r-affy
+ r-biobase
+ r-biocgenerics
+ r-gcrma
+ r-preprocesscore
+ r-zlibbioc))
+ (home-page "https://github.com/bmbolstad/affyPLM")
+ (synopsis "Methods for fitting probe-level models")
+ (description
+ "The affyPLM provides a package that extends and improves the functionality
+of the base affy package. For speeding up the runs, it includes routines that make
+heavy use of compiled code. The central focus is on implementation of methods for
+fitting probe-level models and tools using these models. @acronym{PLM, Product
+Lifecycle Management} based quality assessment tools are also provided.")
+ (license license:gpl2+)))
+
(define-public r-affyrnadegradation
(package
(name "r-affyrnadegradation")
--
2.39.2
next prev parent reply other threads:[~2023-03-20 16:59 UTC|newest]
Thread overview: 7+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-03-20 15:57 [bug#62297] [PATCH] gnu: Add r-affyilm, r-affyplm, r-affylmgui, r-annotationhubdata and r-tkrplot MadalinIonel.Patrascu
2023-03-20 16:00 ` [bug#62297] [PATCH 1/5] gnu: Add r-affyilm Mădălin Ionel Patrașcu
2023-03-20 16:00 ` Mădălin Ionel Patrașcu [this message]
2023-03-20 16:00 ` [bug#62297] [PATCH 3/5] gnu: Add r-tkrplot Mădălin Ionel Patrașcu
2023-03-20 16:00 ` [bug#62297] [PATCH 4/5] gnu: Add r-affylmgui Mădălin Ionel Patrașcu
2023-03-20 16:00 ` [bug#62297] [PATCH 5/5] gnu: Add r-annotationhubdata Mădălin Ionel Patrașcu
2023-03-20 18:33 ` bug#62297: [PATCH 1/5] gnu: Add r-affyilm Ricardo Wurmus
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