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From: Simon Tournier <zimon.toutoune@gmail.com>
To: 61656@debbugs.gnu.org
Cc: Simon Tournier <zimon.toutoune@gmail.com>, rekado@elephly.net
Subject: [bug#61656] [PATCH 00/24] Update some Bioconductor packages
Date: Mon, 20 Feb 2023 16:59:51 +0100	[thread overview]
Message-ID: <20230220155951.240333-1-zimon.toutoune@gmail.com> (raw)

Hi,

Noting that the recent CRAN update breaks r-cytolib, here is a fix by
updating.  So let also take the opportunity for an update of Bioconductor.

Cheers,
simon


Simon Tournier (24):
  gnu: r-cytolib: Update to 2.10.1.
  gnu: r-annotationforge: Update to 1.40.1.
  gnu: r-bsgenome: Update to 1.66.3.
  gnu: r-deseq2: Update to 1.38.3.
  gnu: r-edger: Update to 3.40.2.
  gnu: r-genefilter: Update to 1.80.3.
  gnu: r-genomeinfodb: Update to 1.34.9.
  gnu: r-genomicfeatures: Update to 1.50.4.
  gnu: r-impute: Update to 1.72.3.
  gnu: r-limma: Update to 3.54.1.
  gnu: r-stringdb: Update to 2.10.1.
  gnu: r-variantannotation: Update to 1.44.1.
  gnu: r-oligo: Update to 1.62.2.
  gnu: r-interactionset: Update to 1.26.1.
  gnu: r-dnacopy: Update to 1.72.3.
  gnu: r-lpsymphony: Update to 1.26.3.
  gnu: r-massspecwavelet: Update to 1.64.1.
  gnu: r-biocfilecache: Update to 2.6.1.
  gnu: r-variancepartition: Update to 1.28.4.
  gnu: r-preprocesscore: Update to 1.60.2.
  gnu: r-scuttle: Update to 1.8.4.
  gnu: r-scran: Update to 1.26.2.
  gnu: r-gviz: Update to 1.42.1.
  gnu: r-tximeta: Update to 1.16.1.

 gnu/packages/bioconductor.scm | 99 +++++++++++++++++------------------
 1 file changed, 48 insertions(+), 51 deletions(-)


base-commit: 53e27f8abf1163e29fb5fc17af38b90a67a18138
-- 
2.38.1





             reply	other threads:[~2023-02-20 16:01 UTC|newest]

Thread overview: 26+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2023-02-20 15:59 Simon Tournier [this message]
2023-02-20 18:53 ` [bug#61656] [PATCH 01/24] gnu: r-cytolib: Update to 2.10.1 Simon Tournier
2023-02-20 18:53   ` [bug#61656] [PATCH 02/24] gnu: r-annotationforge: Update to 1.40.1 Simon Tournier
2023-02-20 18:53   ` [bug#61656] [PATCH 03/24] gnu: r-bsgenome: Update to 1.66.3 Simon Tournier
2023-02-20 18:53   ` [bug#61656] [PATCH 04/24] gnu: r-deseq2: Update to 1.38.3 Simon Tournier
2023-02-20 18:53   ` [bug#61656] [PATCH 05/24] gnu: r-edger: Update to 3.40.2 Simon Tournier
2023-02-20 18:53   ` [bug#61656] [PATCH 06/24] gnu: r-genefilter: Update to 1.80.3 Simon Tournier
2023-02-20 18:53   ` [bug#61656] [PATCH 07/24] gnu: r-genomeinfodb: Update to 1.34.9 Simon Tournier
2023-02-20 18:53   ` [bug#61656] [PATCH 08/24] gnu: r-genomicfeatures: Update to 1.50.4 Simon Tournier
2023-02-20 18:53   ` [bug#61656] [PATCH 09/24] gnu: r-impute: Update to 1.72.3 Simon Tournier
2023-02-20 18:53   ` [bug#61656] [PATCH 10/24] gnu: r-limma: Update to 3.54.1 Simon Tournier
2023-02-20 18:53   ` [bug#61656] [PATCH 11/24] gnu: r-stringdb: Update to 2.10.1 Simon Tournier
2023-02-20 18:53   ` [bug#61656] [PATCH 12/24] gnu: r-variantannotation: Update to 1.44.1 Simon Tournier
2023-02-20 18:54   ` [bug#61656] [PATCH 13/24] gnu: r-oligo: Update to 1.62.2 Simon Tournier
2023-02-20 18:54   ` [bug#61656] [PATCH 14/24] gnu: r-interactionset: Update to 1.26.1 Simon Tournier
2023-02-20 18:54   ` [bug#61656] [PATCH 15/24] gnu: r-dnacopy: Update to 1.72.3 Simon Tournier
2023-02-20 18:54   ` [bug#61656] [PATCH 16/24] gnu: r-lpsymphony: Update to 1.26.3 Simon Tournier
2023-02-20 18:54   ` [bug#61656] [PATCH 17/24] gnu: r-massspecwavelet: Update to 1.64.1 Simon Tournier
2023-02-20 18:54   ` [bug#61656] [PATCH 18/24] gnu: r-biocfilecache: Update to 2.6.1 Simon Tournier
2023-02-20 18:54   ` [bug#61656] [PATCH 19/24] gnu: r-variancepartition: Update to 1.28.4 Simon Tournier
2023-02-20 18:54   ` [bug#61656] [PATCH 20/24] gnu: r-preprocesscore: Update to 1.60.2 Simon Tournier
2023-02-20 18:54   ` [bug#61656] [PATCH 21/24] gnu: r-scuttle: Update to 1.8.4 Simon Tournier
2023-02-20 18:54   ` [bug#61656] [PATCH 22/24] gnu: r-scran: Update to 1.26.2 Simon Tournier
2023-02-20 18:54   ` [bug#61656] [PATCH 23/24] gnu: r-gviz: Update to 1.42.1 Simon Tournier
2023-02-20 18:54   ` [bug#61656] [PATCH 24/24] gnu: r-tximeta: Update to 1.16.1 Simon Tournier
2023-02-24  7:12 ` bug#61656: [PATCH 00/24] Update some Bioconductor packages Ricardo Wurmus

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