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Mon, 20 Feb 2023 11:01:03 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pU8b8-0005aZ-Lb for guix-patches@gnu.org; Mon, 20 Feb 2023 11:01:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pU8b8-0003jY-6Q; Mon, 20 Feb 2023 11:01:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61656] [PATCH 00/24] Update some Bioconductor packages Resent-From: Simon Tournier Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 20 Feb 2023 16:01:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 61656 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 61656@debbugs.gnu.org Cc: Simon Tournier , rekado@elephly.net X-Debbugs-Original-To: guix-patches@gnu.org X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by submit@debbugs.gnu.org id=B.167690881514287 (code B ref -1); 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bh=pfZ/s8l0rI+0rGJHOy6+tzZvUpfVVyFkm57j7fqGaCc=; b=IHvMs2L4bB6CR1u888fNjELSnifmKM9ONzn3GmDeeHmta6FMqQPE7vgw5s6IWkkisaY/R9 ABytA3OWS1IQXWHYKAXQMrTTlektMMSChzIuvahn9tY0BKr9wLTR/DsNumHBWf5F+0ZOyE bscUal88WPXRw+2WmaxU4rpc2QmyT/l4JDb4pcHAzDjr7gYA06lLWNwigNS+wdF2raEDpT DHvcRFERYBGgG7ab7AQRiecFR18V+n1tcUOQrpaxIOvDjpWacRdHUlkrbC6NSBMR/ooNb7 8EoSS1KJYIxm7upUQB+0c42tu4gCylmGeDXQ07JkY3ygUmwFznYQD5Vw/RLpmQ== X-Migadu-Scanner: scn1.migadu.com X-Migadu-Spam-Score: -0.25 X-Spam-Score: -0.25 X-Migadu-Queue-Id: C8B7210A35 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20210112 header.b="p/BEsZUR"; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-TUID: JbVEiWu4N1lS Hi, Noting that the recent CRAN update breaks r-cytolib, here is a fix by updating. So let also take the opportunity for an update of Bioconductor. Cheers, simon Simon Tournier (24): gnu: r-cytolib: Update to 2.10.1. gnu: r-annotationforge: Update to 1.40.1. gnu: r-bsgenome: Update to 1.66.3. gnu: r-deseq2: Update to 1.38.3. gnu: r-edger: Update to 3.40.2. gnu: r-genefilter: Update to 1.80.3. gnu: r-genomeinfodb: Update to 1.34.9. gnu: r-genomicfeatures: Update to 1.50.4. gnu: r-impute: Update to 1.72.3. gnu: r-limma: Update to 3.54.1. gnu: r-stringdb: Update to 2.10.1. gnu: r-variantannotation: Update to 1.44.1. gnu: r-oligo: Update to 1.62.2. gnu: r-interactionset: Update to 1.26.1. gnu: r-dnacopy: Update to 1.72.3. gnu: r-lpsymphony: Update to 1.26.3. gnu: r-massspecwavelet: Update to 1.64.1. gnu: r-biocfilecache: Update to 2.6.1. gnu: r-variancepartition: Update to 1.28.4. gnu: r-preprocesscore: Update to 1.60.2. gnu: r-scuttle: Update to 1.8.4. gnu: r-scran: Update to 1.26.2. gnu: r-gviz: Update to 1.42.1. gnu: r-tximeta: Update to 1.16.1. gnu/packages/bioconductor.scm | 99 +++++++++++++++++------------------ 1 file changed, 48 insertions(+), 51 deletions(-) base-commit: 53e27f8abf1163e29fb5fc17af38b90a67a18138 -- 2.38.1