unofficial mirror of guix-patches@gnu.org 
 help / color / mirror / code / Atom feed
From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <61220@debbugs.gnu.org>
Cc: rekado@elephly.net
Subject: [bug#61220] [PATCH 04/10] gnu: Add r-italics.
Date: Thu, 2 Feb 2023 03:26:51 +0100	[thread overview]
Message-ID: <20230202022657.67003-4-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <20230202022657.67003-1-madalinionel.patrascu@mdc-berlin.de>

* gnu/packages/bioconductor.scm (r-italics): New variable.
---
 gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index fa8e60a4f4..1efafb1cd3 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4510,6 +4510,33 @@ (define-public r-isoformswitchanalyzer
 Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.")
     (license license:gpl2+)))
 
+(define-public r-italics
+  (package
+    (name "r-italics")
+    (version "2.58.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "ITALICS" version))
+       (sha256
+        (base32 "0g937h9zxkxnm424wh58b46mfasdd7pqy5c04r0a46mx9lxibgbs"))))
+    (properties `((upstream-name . "ITALICS")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-affxparser
+           r-dbi
+           r-glad
+           r-italicsdata
+           r-oligo
+           r-oligoclasses
+           r-pd-mapping50k-xba240))
+    (home-page "http://bioinfo.curie.fr") ;;no https
+    (synopsis "Normalizing of the Affymetrix GeneChip human mapping")
+    (description
+     "This package provides a method to normalize the Affymetrix GeneChip human
+mapping 100K and 500K set.")
+    (license license:gpl2)))
+
 ;; This is a CRAN package, but it depends on r-biobase and r-limma from Bioconductor.
 (define-public r-absfiltergsea
   (package
-- 
2.39.1





  parent reply	other threads:[~2023-02-02  2:28 UTC|newest]

Thread overview: 13+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2023-02-02  2:23 [bug#61220] [patch] gnu: Add r-glad, r-italicsdata, r-pd-mapping50k-xba240, r-italics, r-manor, r-tilingarray, r-snapcgh, r-quantsmooth, r-beadarraysnp and r-adacgh2 MadalinIonel.Patrascu
2023-02-02  2:26 ` [bug#61220] [PATCH 01/10] gnu: Add r-glad Mădălin Ionel Patrașcu
2023-02-02  2:26   ` [bug#61220] [PATCH 02/10] gnu: Add r-italicsdata Mădălin Ionel Patrașcu
2023-02-02  2:26   ` [bug#61220] [PATCH 03/10] gnu: Add r-pd-mapping50k-xba240 Mădălin Ionel Patrașcu
2023-02-02  2:26   ` Mădălin Ionel Patrașcu [this message]
2023-02-02  2:26   ` [bug#61220] [PATCH 05/10] gnu: Add r-manor Mădălin Ionel Patrașcu
2023-02-02  2:26   ` [bug#61220] [PATCH 06/10] gnu: Add r-tilingarray Mădălin Ionel Patrașcu
2023-02-02  2:26   ` [bug#61220] [PATCH 07/10] gnu: Add r-snapcgh Mădălin Ionel Patrașcu
2023-02-02  2:26   ` [bug#61220] [PATCH 08/10] gnu: Add r-quantsmooth Mădălin Ionel Patrașcu
2023-02-02  2:26   ` [bug#61220] [PATCH 09/10] gnu: Add r-beadarraysnp Mădălin Ionel Patrașcu
2023-02-02  2:26   ` [bug#61220] [PATCH 10/10] gnu: Add r-adacgh2 Mădălin Ionel Patrașcu
2023-02-07  9:30     ` Ricardo Wurmus
2023-02-07  9:31   ` bug#61220: [PATCH 01/10] gnu: Add r-glad Ricardo Wurmus

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

  List information: https://guix.gnu.org/

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=20230202022657.67003-4-madalinionel.patrascu@mdc-berlin.de \
    --to=madalinionel.patrascu@mdc-berlin.de \
    --cc=61220@debbugs.gnu.org \
    --cc=rekado@elephly.net \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body.
Code repositories for project(s) associated with this public inbox

	https://git.savannah.gnu.org/cgit/guix.git

This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).